Modeling Hybridization Under the Network Multispecies Coalescent

Systematic Biology
James H Degnan

Abstract

Simultaneously modeling hybridization and the multispecies coalescent is becoming increasingly common, and inference of species networks in this context is now implemented in several software packages. This article addresses some of the conceptual issues and decisions to be made in this modeling, including whether or not to use branch lengths and issues with model identifiability. This article is based on a talk given at a Spotlight Session at Evolution 2017 meeting in Portland, Oregon. This session included several talks about modeling hybridization and gene flow in the presence of incomplete lineage sorting. Other talks given at this meeting are also included in this special issue of Systematic Biology.

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Citations

Feb 20, 2019·American Journal of Primatology·Carlos G Schrago, Hector N Seuánez
Dec 12, 2019·Molecular Biology and Evolution·Tomáš FlouriZiheng Yang
Jan 25, 2020·Systematic Biology·Xiyun JiaoZiheng Yang
Nov 27, 2018·Molecular Ecology·James B Pease
Oct 8, 2020·Bioinformatics·Ruoyi Cai, Cécile Ané
Dec 3, 2020·Systematic Biology·Mafalda S FerreiraJosé Melo-Ferreira
Mar 27, 2021·Journal of Mathematical Biology·Katharina T HuberVincent Moulton
Jul 6, 2021·Molecular Phylogenetics and Evolution·Hernán Vázquez-Miranda, F Keith Barker
May 5, 2021·Genome Biology and Evolution·Krzysztof M KozakChris D Jiggins
Sep 4, 2021·PLoS Computational Biology·Charles-Elie RabierCeline Scornavacca
Nov 18, 2021·Genetics·Mark S Hibbins, Matthew W Hahn

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