PMID: 2107323Jan 1, 1990Paper

Molecular anatomy: phyletic relationships derived from three-dimensional structures of proteins

Journal of Molecular Evolution
M S JohnsonT L Blundell

Abstract

A distance measure that reflects the dissimilarity among structures has been developed on the basis of the three-dimensional structures of similar proteins, this being totally independent of sequence in the sense that only the relative spatial positions of mainchain alpha-carbon atoms need be known. This procedure leads to phyletic relationships that are in general correlated with the sequence phylogenies based on residue type. Such relationships among known protein three-dimensional structures are also a useful aid to their classification and selection in knowledge-based modeling using homologous structures. We have applied this approach to six homologous sets of proteins: immunoglobulin fragments, globins, cytochromes c, serine proteinases, eye-lens gamma crystallins, and dinucleotide-binding domains.

References

May 11, 1978·Nature·G E SchulzE F Pai
Feb 5, 1976·Journal of Molecular Biology·R E DickersonR J Almassy
Mar 25, 1976·Journal of Molecular Biology·H EklundA Akeson
Dec 20, 1979·Nature·R HaserJ Le Gall
Aug 11, 1977·Nature·J S Richardson
Jan 25, 1979·Journal of Molecular Biology·W Steigemann, E Weber
Feb 15, 1979·Journal of Molecular Biology·A D McLachlan
May 25, 1977·Journal of Molecular Biology·F C BernsteinM Tasumi
May 5, 1977·Journal of Molecular Biology·J A Frier, M F Perutz
Apr 25, 1976·Journal of Molecular Biology·J L WhiteM G Rossmann
Feb 20, 1975·Nature·M GoodmanG Matsuda
Aug 1, 1975·CRC Critical Reviews in Biochemistry·W Eventoff, M G Rossmann
Aug 31, 1989·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·T L BlundellJ E Pitts
Jul 20, 1985·Journal of Molecular Biology·D C CarterC D Stout
Mar 21, 1986·Journal of Theoretical Biology·J A Leunissen, W W de Jong
Jan 1, 1987·Journal of Molecular Evolution·D F Feng, R F Doolittle
Apr 5, 1988·Journal of Molecular Biology·R J Read, M N James
Jan 1, 1987·Cold Spring Harbor Symposia on Quantitative Biology·C I BrändénG Lorimer
Feb 1, 1988·Acta Crystallographica. Section B, Structural Science·E MeyerO Epp
Apr 1, 1988·Acta Crystallographica. Section B, Structural Science·H E WhiteP F Lindley
Mar 15, 1988·European Journal of Biochemistry·T BlundellM Sutcliffe
May 2, 1988·European Journal of Biochemistry·E CederlundH Jörnvall
Jul 5, 1985·Journal of Molecular Biology·R B HonzatkoW E Love
Aug 20, 1985·Journal of Molecular Biology·H Tsukada, D M Blow
Jan 1, 1985·Methods in Enzymology·B W Matthews, M G Rossmann
Nov 1, 1973·Proceedings of the National Academy of Sciences of the United States of America·M BuehnerM G Rossman
Jul 19, 1974·Nature·M G RossmannK W Olsen
Oct 25, 1974·Journal of Molecular Biology·I OhlssonC I Brändén
Jan 1, 1971·Journal of Molecular Evolution·R E Dickerson
May 15, 1973·Journal of Molecular Biology·S T Rao, M G Rossmann
Jan 20, 1967·Science·W M Fitch, E Margoliash
Mar 1, 1970·Journal of Molecular Biology·S B Needleman, C D Wunsch
Jan 1, 1984·Journal of Molecular Evolution·D F FengR F Doolittle
Apr 5, 1981·Journal of Molecular Biology·R P AmblerL Sawyer
Nov 25, 1981·Journal of Molecular Biology·T Takano, R E Dickerson

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Citations

Jun 1, 1993·Protein Science : a Publication of the Protein Society·T L Blundell, M S Johnson
Oct 1, 1994·Protein Science : a Publication of the Protein Society·W R TaylorC A Orengo
Oct 1, 1995·Protein Science : a Publication of the Protein Society·O H KappS N Vinogradov
Apr 1, 1991·Journal of Molecular Evolution·J Rose, F Eisenmenger
Jan 1, 1993·Journal of Molecular Evolution·C X QuY Q Tang
Apr 14, 2006·Journal of Molecular Evolution·Lorraine Marsh
Jun 1, 1995·Current Opinion in Structural Biology·K Mizuguchi, N Go
Jun 24, 2011·Journal of Biomolecular Structure & Dynamics·Joydeep Chakraborty, Tapan K Dutta
Jul 13, 2013·Database : the Journal of Biological Databases and Curation·Swapnil MahajanNarayanaswamy Srinivasan
Jan 11, 2000·Nucleic Acids Research·S BalajiN Srinivasan
May 30, 2002·Nucleic Acids Research·Gustavo Caetano-Anollés
Jun 28, 2005·Antimicrobial Agents and Chemotherapy·Gianpiero GarauBarry G Hall
Jul 26, 2006·Proceedings of the National Academy of Sciences of the United States of America·Junjie XuYunyu Shi
Dec 1, 1991·Current Opinion in Genetics & Development·R L Dorit, W Gilbert
Aug 12, 2015·PloS One·Balasubramanian LakshmiGovindaraju Archunan
Feb 5, 1999·Journal of Molecular Biology·K Fukami-KobayashiK Nishikawa
Jan 8, 1999·Journal of Molecular Biology·C Zhang, C DeLisi
Jan 1, 1994·Critical Reviews in Biochemistry and Molecular Biology·M S JohnsonT L Blundell
Feb 1, 1994·Journal of Computer-aided Molecular Design·S D Rufino, T L Blundell
May 31, 2013·Proteins·Christopher M TophamIsabelle André
Jan 13, 2009·The Biochemical Journal·Gustavo Caetano-AnollésJay E Mittenthal
Jan 1, 2014·The Annals of Applied Statistics·Abel Rodriguez, Scott C Schmidler
Mar 7, 1996·Biophysical Chemistry·G Böhm
Aug 12, 2021·Journal of Biomolecular Structure & Dynamics·Abdolamir GhadaksazMohsen Amin

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