Molecular identification of the occurrence of magnetotactic bacteria in fresh water sediments (Czech Republic)

Brazilian Journal of Microbiology : [publication of the Brazilian Society for Microbiology]
Martin Rulík, Prem Prashant Chaudhary

Abstract

Magnetotactic bacteria (MTB) are of considerable interest because of their importance in the manufacture of various bioinspired materials. In order to find out the status of magnetotactic bacteria at three different sediment in Czech Republic, samples collected from both standing and running freshwaters were subjected to molecular diversity analysis by using 16S rRNA gene approach. Total community DNA from sediment sample was isolated and used for PCR, cloning and sequence analysis. Of the 24 analyzed sequences, six clones are closely related to Magnetobacterium sp. affiliated with the Nitrospira phylum which showed the dominance of Magnetobacterium phylotypes in the sample. This study will provide useful insight about the community structure of MTB in this particular geographical region. However more detailed and specific studies are warranted in order to properly assess the community structure of MTB's in fresh water sediments.

Datasets Mentioned

BETA
GQ246749
GQ246750
GQ246751
GQ246752
GQ246753
GQ246754
EF613379

Methods Mentioned

BETA
PCR

Software Mentioned

MEGA
Clustal W
Basic Local Alignment Search Tool ( BLAST )

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