Molecular, morphological, and cytological analysis of diverse Brachypodium distachyon inbred lines

Genome Génome / Conseil National De Recherches Canada
Ertugrul FilizHikmet Budak

Abstract

Brachypodium distachyon (brachypodium) is a small grass with the biological and genomic attributes necessary to serve as a model system for all grasses including small grains and grasses being developed as energy crops (e.g., switchgrass and Miscanthus). To add natural variation to the toolkit available to plant biologists using brachypodium as a model system, it is imperative to establish extensive, well-characterized germplasm collections. The objectives of this study were to collect brachypodium accessions from throughout Turkey and then characterize the molecular (nuclear and organelle genome), morphological, and cytological variation within the collection. We collected 164 lines from 45 diverse geographic regions of Turkey and created 146 inbred lines. The majority of this material (116 of 146 inbred lines) was diploid. The similarity matrix for the diploid lines based on AFLP analysis indicated extensive diversity, with genetic distances ranging from 0.05 to 0.78. Organelle genome diversity, on the other hand, was low both among and within the lines used in this study. The geographic distribution of genotypes was not significantly correlated with either nuclear or organelle genome variation for the genotypes studied. Phen...Continue Reading

References

Oct 1, 1979·Proceedings of the National Academy of Sciences of the United States of America·M Nei, W H Li
Dec 18, 2001·Plant Physiology·J DraperA P Routledge
Sep 19, 2003·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·H BudakI Dweikat
Mar 17, 2004·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·H BudakI Dweikat
Jul 9, 2004·Chromosome Research : an International Journal on the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology·Robert HasterokGlyn Jenkins
Dec 15, 2004·Annals of Botany·M D Bennett, I J Leitch
Aug 27, 2005·Genome Génome / Conseil National De Recherches Canada·Hikmet BudakIsmail Dweikat
Oct 7, 2005·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·H BudakI Dweikat
Jun 23, 2006·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·John P VogelDevin Coleman-Derr
Nov 18, 2006·Genome Génome / Conseil National De Recherches Canada·Naxin HuoOlin D Anderson
Sep 26, 2007·Genome Génome / Conseil National De Recherches Canada·Z IsikH Budak
Nov 7, 2007·Functional & Integrative Genomics·Naxin HuoYong Q Gu
Mar 1, 2008·International Journal of Plant Genomics·Bahar Sogutmaz OzdemirHikmet Budak

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Citations

Feb 4, 2012·The Arabidopsis Book·Joohyun KangEnrico Martinoia
May 24, 2013·Chemical Reviews·Haifeng DongXueji Zhang
Feb 23, 2010·Nature Cell Biology·Li MaRobert A Weinberg
Dec 14, 2011·Nature Communications·Shiri FreilichEytan Ruppin
Jan 10, 2013·Nature Communications·Supriya SenNicholas J G Webster
Oct 17, 2013·Nature Communications·Philippe RanochaDeborah Goffner
May 13, 2011·Nature Reviews. Cancer·Heidi SchwarzenbachKlaus Pantel
Feb 26, 2010·Nature Reviews. Immunology·Adrian J Thrasher, Siobhan O Burns
May 24, 2012·Nature Reviews. Molecular Cell Biology·Shifeng Xue, Maria Barna
Nov 30, 2011·Omics : a Journal of Integrative Biology·Hikmet Budak, Ani Akpinar
Jul 7, 2011·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Keiichi MochidaLam-Son Phan Tran
Jan 11, 2012·Journal of Experimental Botany·Fabien ChardonCéline Masclaux-Daubresse
Apr 19, 2013·Molecular Plant-microbe Interactions : MPMI·Michael AyliffeTony Pryor
Apr 25, 2012·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·David Pacheco-Villalobos, Christian S Hardtke
Apr 25, 2012·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Paul A IngramTedd Elich
Jul 21, 2011·Plant Physiology·Jelena BrkljacicJohn P Vogel
Jul 14, 2012·Genome Génome / Conseil National De Recherches Canada·Patricia GiraldoElena Benavente
Feb 19, 2011·Annual Review of Marine Science·Michael W LomasGer van den Engh
Apr 7, 2010·Current Opinion in Biotechnology·Michael W BevanJohn P Vogel
Sep 24, 2015·Annual Review of Genetics·Elizabeth A Kellogg
Sep 30, 2010·Physiologia Plantarum·Na LuoYiwei Jiang
Jun 1, 2011·The New Phytologist·Luis A J MurJohn Vogel
Jun 4, 2014·The Plant Journal : for Cell and Molecular Biology·Sean P GordonJohn P Vogel
Sep 7, 2016·Plant Science : an International Journal of Experimental Plant Biology·David L Des MaraisThomas E Juenger
Mar 12, 2015·International Journal of Radiation Biology·Dae Yeon KimYong Weon Seo
Aug 19, 2015·Frontiers in Plant Science·Melania FigueroaJames M Bradeen
Jan 27, 2015·Annual Review of Plant Biology·Thomas P BrutnellJohn P Vogel
Mar 27, 2015·Annals of Botany·Timothy L FitzgeraldKemal Kazan
Sep 30, 2014·Journal of Experimental Botany·Thomas GirinFrançoise Daniel-Vedele
Feb 12, 2010·Nature·UNKNOWN International Brachypodium Initiative

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