MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians

Bioinformatics
K Joeri van der VeldeMorris A Swertz

Abstract

The volume and complexity of biological data increases rapidly. Many clinical professionals and biomedical researchers without a bioinformatics background are generating big '-omics' data, but do not always have the tools to manage, process or publicly share these data. Here we present MOLGENIS Research, an open-source web-application to collect, manage, analyze, visualize and share large and complex biomedical datasets, without the need for advanced bioinformatics skills. MOLGENIS Research is freely available (open source software). It can be installed from source code (see http://github.com/molgenis), downloaded as a precompiled WAR file (for your own server), setup inside a Docker container (see http://molgenis.github.io), or requested as a Software-as-a-Service subscription. For a public demo instance and complete installation instructions see http://molgenis.org/research.

References

Jan 19, 2011·BMC Bioinformatics·Morris A SwertzHelen Parkinson
Jan 22, 2011·Bioinformatics·Thomas A DownTim J P Hubbard
Nov 2, 2014·Journal of the American Medical Informatics Association : JAMIA·Chao PangMorris A Swertz
Jan 1, 2014·Health Information Science and Systems·Wullianallur Raghupathi, Viju Raghupathi
Sep 20, 2015·Database : the Journal of Biological Databases and Curation·Chao PangMorris A Swertz
Mar 16, 2016·Scientific Data·Mark D WilkinsonBarend Mons
Jun 25, 2016·Genome Medicine·Charles AuffrayGianluigi Zanetti
Jan 18, 2017·Genome Biology·K Joeri van der VeldeMorris A Swertz
May 10, 2017·BMC Public Health·David M StiebMichelle C Turner

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Citations

May 30, 2020·Journal of Cardiovascular Development and Disease·Tyler L StevensPeter J Mohler
May 24, 2020·European Journal of Human Genetics : EJHG·Petr HolubUNKNOWN BBMRI-ERIC community
Jun 3, 2021·European Journal of Human Genetics : EJHG·Birte ZurekUNKNOWN Solve-RD consortium

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Methods Mentioned

BETA
RNA-seq
flow cytometry

Software Mentioned

Dalliance genome browser
Apache Maven
REST
R
MOLGENIS Research
Python
Remote File Ingest
Genome Browser
Scripts
PostgreSQL

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