Mosaic: making biological sense of complex networks.

Bioinformatics
Chao ZhangAlexander R Pico

Abstract

We present a Cytoscape plugin called Mosaic to support interactive network annotation, partitioning, layout and coloring based on gene ontology or other relevant annotations. Mosaic is distributed for free under the Apache v2.0 open source license and can be downloaded via the Cytoscape plugin manager. A detailed user manual is available on the Mosaic web site (http://nrnb.org/tools/mosaic).

References

Jan 15, 2003·BMC Bioinformatics·Gary D Bader, Christopher W V Hogue
Jun 9, 2005·Physiological Genomics·Jennifer Y KingEuan A Ashley
Jul 12, 2008·PLoS Computational Biology·Loïc RoyerMichael Schroeder
Dec 15, 2010·Bioinformatics·Michael E SmootTrey Ideker
Dec 7, 2011·AMB Express·Daniel MachadoIsabel Rocha

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Citations

Jun 12, 2013·Bioinformatics·Chao ZhangAlexander R Pico
Jan 19, 2013·Database : the Journal of Biological Databases and Curation·Prudence Mutowo-MeullenetRolf Apweiler
Jun 12, 2013·Human Molecular Genetics·Dorothee NicklesSergio E Baranzini
Jun 8, 2014·Integrative and Comparative Biology·Antje H L FischerJoel Smith
Feb 13, 2013·Proceedings of the National Academy of Sciences of the United States of America·Anna Hoerder-SuabedissenZoltán Molnár
Aug 10, 2016·BMC Systems Biology·Hao ZhangDong Xu
Aug 12, 2014·F1000Research·Jianjiong GaoAlexander R Pico
May 23, 2018·Nature Medicine·Ren XuMatthew B Greenblatt
May 1, 2015·BMC Bioinformatics·Corinna VehlowCarsten Görg
Nov 18, 2020·Briefings in Bioinformatics·Dipanka Tanu SarmahSamrat Chatterjee
Jun 18, 2021·Cell Systems·Leah V Schaffer, Trey Ideker

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Software Mentioned

Cytoscape
Mosaic
Ensembl

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