Multilocus resolution of phylogeny and timescale in the extant adaptive radiation of Hawaiian honeycreepers

Current Biology : CB
Heather R L LernerRobert C Fleischer

Abstract

Evolutionary theory has gained tremendous insight from studies of adaptive radiations. High rates of speciation, morphological divergence, and hybridization, combined with low sequence variability, however, have prevented phylogenetic reconstruction for many radiations. The Hawaiian honeycreepers are an exceptional adaptive radiation, with high phenotypic diversity and speciation that occurred within the geologically constrained setting of the Hawaiian Islands. Here we analyze a new data set of 13 nuclear loci and pyrosequencing of mitochondrial genomes that resolves the Hawaiian honeycreeper phylogeny. We show that they are a sister taxon to Eurasian rosefinches (Carpodacus) and probably came to Hawaii from Asia. We use island ages to calibrate DNA substitution rates, which vary substantially among gene regions, and calculate divergence times, showing that the radiation began roughly when the oldest of the current large Hawaiian Islands (Kauai and Niihau) formed, ~5.7 million years ago (mya). We show that most of the lineages that gave rise to distinctive morphologies diverged after Oahu emerged (4.0-3.7 mya) but before the formation of Maui and adjacent islands (2.4-1.9 mya). Thus, the formation of Oahu, and subsequent cycles...Continue Reading

References

Sep 1, 2001·Cellular and Molecular Life Sciences : CMLS·A Arnaiz-VillenaL M Allende
Jan 15, 2002·Proceedings. Biological Sciences·Irby J LovetteRobert E Ricklefs
Jul 30, 2002·Evolution; International Journal of Organic Evolution·Kevin J BurnsNedra K Klein
Dec 24, 2002·Proceedings. Biological Sciences·Jonathan P Price, David A Clague
May 14, 2004·Molecular Biology and Evolution·Erik AxelssonHans Ellegren
Dec 25, 2004·Proceedings of the National Academy of Sciences of the United States of America·James F GilloolyJames H Brown
Aug 3, 2007·Nucleic Acids Research·Matthias MeyerMichael Hofreiter
Feb 16, 2008·Nature Protocols·Matthias MeyerMichael Hofreiter
Apr 22, 2008·Molecular Ecology·J T Weir, Dolph Schluter
Dec 18, 2008·Biology Letters·Dawn M RedingRobert C Fleischer
Apr 15, 2009·Biology Letters·Lindell Bromham
Oct 20, 2009·Trends in Genetics : TIG·Sankar SubramanianDavid M Lambert
Mar 17, 2010·Bioinformatics·Remco R Bouckaert
Aug 5, 2010·Evolution; International Journal of Organic Evolution·John E McCormackL Lacey Knowles

Citations

Apr 17, 2012·Proceedings of the National Academy of Sciences of the United States of America·Knud A JønssonMartin Irestedt
Aug 24, 2012·Proceedings. Biological Sciences·Julie W SmithCraig W Benkman
Jan 16, 2014·BMC Evolutionary Biology·Per G P EricsonJohan A A Nylander
Feb 14, 2014·Proceedings. Biological Sciences·Emmanuel Pasco-VielLaurent Viriot
Apr 25, 2014·Proceedings. Biological Sciences·Luis ValenteAlbert B Phillimore
Jun 2, 2014·Molecular Biology and Evolution·Kieren J MitchellAlan Cooper
Dec 8, 2015·Mitochondrial DNA. Part A. DNA Mapping, Sequencing, and Analysis·Xianyun DongLifu Qian
Dec 30, 2015·Mitochondrial DNA. Part A. DNA Mapping, Sequencing, and Analysis·Yanan FanXingxing Yao
Sep 15, 2015·Mitochondrial DNA. Part A. DNA Mapping, Sequencing, and Analysis·Krisangel LópezMatthew J Miller
Sep 4, 2015·Mitochondrial DNA. Part A. DNA Mapping, Sequencing, and Analysis·Zhen ZhangBaowei Zhang
Dec 12, 2012·Molecular Phylogenetics and Evolution·Brian Tilston SmithJohn Klicka
Jun 19, 2012·Molecular Phylogenetics and Evolution·Johanna L A PaijmansMichael Hofreiter
Dec 15, 2015·Journal of Theoretical Biology·Áki J Láruson, Floyd A Reed
Mar 10, 2016·Molecular Phylogenetics and Evolution·Andreanna J WelchCharlotte Lindqvist
Oct 18, 2015·Molecular Phylogenetics and Evolution·Gary VoelkerRauri C K Bowie
Jun 29, 2014·Molecular Phylogenetics and Evolution·F Keith Barker
Mar 17, 2016·Molecular Phylogenetics and Evolution·Jose L Panero, Bonnie S Crozier
Jun 22, 2013·Ecology and Evolution·Sergei V DrovetskiGary Voelker
Mar 28, 2013·Ecology and Evolution·Gary VoelkerJ E Light
Jan 10, 2013·Journal of Evolutionary Biology·L M CaroC D Cadena
Apr 23, 2014·Evolution; International Journal of Organic Evolution·Juan Carlos IlleraMiguel Navascués
May 30, 2015·Molecular Phylogenetics and Evolution·Ashlee ShiphamJane M Hughes
Apr 9, 2016·Molecular Phylogenetics and Evolution·Jerry W Huntley, Gary Voelker
Aug 2, 2016·Zoologica Scripta·Katrin A Wanek, Christian Sturmbauer
May 3, 2014·Biological Reviews of the Cambridge Philosophical Society·Adrien FavreAlexandra N Muellner-Riehl
Aug 28, 2015·Genetika·A S DruzhkovaA S Graphodatsky
Dec 17, 2014·BMC Genomics·Taylor CallicrateRobert C Fleischer
Mar 25, 2015·Molecular Phylogenetics and Evolution·Jérôme Fuchs, Rauri C K Bowie
Mar 23, 2015·Molecular Phylogenetics and Evolution·Elizabeth J Beckman, Christopher C Witt
Oct 23, 2013·Molecular Phylogenetics and Evolution·Enrique Arbeláez-CortésAdolfo G Navarro-Sigüenza
Sep 16, 2014·Molecular Phylogenetics and Evolution·Kari Roesch GoodmanPatrick Michael O'Grady
Dec 14, 2011·Current Biology : CB·Trevor D Price
Sep 27, 2014·Molecular Phylogenetics and Evolution·Juan C García-RSteve A Trewick
Sep 25, 2012·Molecular Phylogenetics and Evolution·Alexis F L A PowellScott M Lanyon
May 15, 2013·Molecular Phylogenetics and Evolution·Richard T LapointNoah K Whiteman
Jun 19, 2012·Molecular Phylogenetics and Evolution·David W Weisrock
Apr 8, 2014·Current Biology : CB·Jimmy A McGuireRobert Dudley
Dec 3, 2014·Molecular Phylogenetics and Evolution·Frank HailerRobert C Fleischer
Jun 13, 2015·Royal Society Open Science·Per AlströmMartin Irestedt
Jun 7, 2014·Frontiers in Genetics·Christy A Hipsley, Johannes Müller
Jun 13, 2015·Royal Society Open Science·Michael J AndersenRobert G Moyle
Jun 24, 2016·Proceedings. Biological Sciences·Knud A JønssonMartin Irestedt
Aug 3, 2016·Molecular Ecology·Benoit NabholzJérôme Fuchs
Oct 21, 2016·Evolution; International Journal of Organic Evolution·Russell A LigonKevin J McGraw
Dec 21, 2016·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Masayoshi TokitaArhat Abzhanov
Mar 23, 2017·Molecular Ecology·Hernán E MoralesAlexandra Pavlova
Sep 8, 2016·Molecular Phylogenetics and Evolution·Jeff A JohnsonDavid P Mindell
Jan 16, 2018·Molecular Ecology·Annika Mae LambAlexandra Pavlova
Dec 15, 2017·Ecology and Evolution·Jean-François PongeÉric Guilbert
Oct 22, 2017·Evolution; International Journal of Organic Evolution·Joshua P JahnerLee A Dyer
May 18, 2018·Systematic Biology·Tobias AndermannAlexandre Antonelli
Apr 17, 2015·American Journal of Botany·Mark E MortJuli Caujapé-Castells
Aug 29, 2018·Evolution; International Journal of Organic Evolution·Ben H WarrenElena Conti
Sep 11, 2018·Evolution; International Journal of Organic Evolution·Michael J LandisBruce G Baldwin
Oct 26, 2018·Proceedings. Biological Sciences·Sergei V DrovetskiGary Voelker
Dec 19, 2018·Evolution; International Journal of Organic Evolution·Michael D Burns, Brian L Sidlauskas
Dec 20, 2018·Molecular Ecology·Yu-Chi ChenChih-Ming Hung
Mar 4, 2018·Nature Communications·Anna M KearnsKevin E Omland
Oct 8, 2014·PloS One·Juan C García-RSteve A Trewick
Jul 20, 2017·Evolution; International Journal of Organic Evolution·Benjamin G FreemanDolph Schluter
Oct 30, 2019·Proceedings of the National Academy of Sciences of the United States of America·Peter R Grant, B Rosemary Grant
Feb 9, 2020·Molecular Ecology·David L SlagerJohn Klicka
Sep 12, 2020·Journal of Evolutionary Biology·Ethan LinckJohn P Dumbacher
Jun 19, 2020·Zoological Science·Takema SaitohAlexey P Kryukov
May 3, 2019·Biological Reviews of the Cambridge Philosophical Society·Stefan Abrahamczyk
Mar 5, 2020·Ecology and Evolution·George C CumminsEben H Paxton
Feb 21, 2020·Nature·Luis ValenteRampal S Etienne
Jan 1, 2020·BMC Evolutionary Biology·Alberto Rocha-MéndezAdolfo G Navarro-Sigüenza
Aug 16, 2019·BMC Evolutionary Biology·Jan T LifjeldArild Johnsen
Jun 4, 2020·Ecology and Evolution·Guinevere O U WoganRauri C K Bowie
Jun 7, 2017·BMC Evolutionary Biology·Yuyini Licona-Vera, Juan Francisco Ornelas
Jul 19, 2017·Genes·Alicia GrealyMichael Bunce
Jan 21, 2020·The Journal of Heredity·Rosemary G GillespieGuinevere O U Wogan
Aug 28, 2020·Genome Biology and Evolution·Corinna A PinzariFrank J Bonaccorso

Related Concepts

Cell Nucleus
Geology
Phylogeny
Nested Polymerase Chain Reaction
Sequence Determinations, DNA
Evolution, Molecular
Finches
Genome, Mitochondrial
Genes
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