Jan 21, 2015

NCBI BLAST+ integrated into Galaxy

BioRxiv : the Preprint Server for Biology
Peter J. A. CockNicola Soranzo

Abstract

Background: The NCBI BLAST suite has become ubiquitous in modern molecular biology, used for small tasks like checking capillary sequencing results of single PCR products through to genome annotation or even larger scale pan-genome analyses. For early adopters of the Galaxy web-based biomedical data analysis platform, integrating BLAST was a natural step for sequence comparison workflows. Findings: The command line NCBI BLAST+ tool suite was wrapped for use within Galaxy, defining appropriate datatypes as needed, with the goal of making common BLAST tasks easy, and advanced tasks possible. Conclusions: This effort has been come an informal international collaborative effort, and is deployed and used on Galaxy servers worldwide. Several example use-cases are described herein.

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Mentioned in this Paper

Exertion
Basic Local Alignment Search Tool
Ncbi Taxonomy
Nucleic Acid Sequencing
Integrator, veterinary brand name drug
Sequencing
Comparative Genomic Analysis
Entire Capillary Blood Vessel (Organ)
Gene Annotation
Molecular Biology

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