Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection.

BioRxiv : the Preprint Server for Biology
Komudi SinghMehdi Pirooznia

Abstract

Lack of effective treatment strategy and vaccine makes SARS-CoV-2 infection a big threat to mankind. Analyzing the host transcriptional changes in response to virus infection will help delineate the biological processes impacted by the virus and will potentially facilitate drug development. Using RNA seq datasets of virus infected lung cell lines A549 (infected with either SARS-CoV-2 or Influenza A virus (IAV)) and Calu3 (infected with either SARS-CoV-2 or MERS-CoV), we present a detailed analysis of genes expression changes in response to each of these viral infections. Upregulation of the antiviral interferon signaling was observed with all three viral infections. However, upregulation of the cytokine/inflammatory processes, downregulation of mitochondrial organization and respiration processes, and perturbation in the autophagic processes were specifically observed in SARS-CoV-2 infected cells, which were absent in IAV infected cells. Upregulation of the inflammatory processes was concordant with the gene expression signature of COVID-19 lungs and with inflammatory symptoms observed in severe cases of COVID-19 patients. Coexpression networks analysis also facilitated the identification of protein-protein interaction (PPI) su...Continue Reading

Citations

Aug 9, 2020·Inflammation Research : Official Journal of the European Histamine Research Society ... [et Al.]·Santosh Shenoy
Jan 1, 2021·Molecules : a Journal of Synthetic Chemistry and Natural Product Chemistry·Leonardo LupacchiniPatrizia Russo
Jan 13, 2021·Briefings in Bioinformatics·Md Asif AhsanMing Chen
Apr 30, 2021·Frontiers in Neurology·Mar Pacheco-HerreroJosé Luna-Muñoz
May 26, 2021·NPJ Systems Biology and Applications·Marisol Salgado-AlbarránErnesto Soto-Reyes

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