NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants.

Nucleic Acids Research
Lianhe ZhaoShunmin He

Abstract

NONCODE (http://www.noncode.org/) is a comprehensive database of collection and annotation of noncoding RNAs, especially long non-coding RNAs (lncRNAs) in animals. NONCODEV6 is dedicated to providing the full scope of lncRNAs across plants and animals. The number of lncRNAs in NONCODEV6 has increased from 548 640 to 644 510 since the last update in 2017. The number of human lncRNAs has increased from 172 216 to 173 112. The number of mouse lncRNAs increased from 131 697 to 131 974. The number of plant lncRNAs is 94 697. The relationship between lncRNAs in human and cancer were updated with transcriptome sequencing profiles. Three important new features were also introduced in NONCODEV6: (i) updated human lncRNA-disease relationships, especially cancer; (ii) lncRNA annotations with tissue expression profiles and predicted function in five common plants; iii) lncRNAs conservation annotation at transcript level for 23 plant species. NONCODEV6 is accessible through http://www.noncode.org/.

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Citations

Apr 27, 2021·Frontiers in Molecular Biosciences·Nikita Fernandes, J Ross Buchan
Jun 3, 2021·International Journal of Molecular Sciences·Irina V Bure, Marina V Nemtsova
Jul 24, 2021·Journal of Periodontal Research·Jingchen XuSong Chen
Aug 6, 2021·Frontiers in Molecular Neuroscience·Rafaela PolicarpoConstantin d'Ydewalle
Sep 1, 2021·Cancer Cell International·Biao LiuJianye Liu
Jul 10, 2021·Trends in Genetics : TIG·Nicole A Leypold, Michael R Speicher
Oct 6, 2021·Proceedings of the National Academy of Sciences of the United States of America·Shuo LiuXuetao Cao
Sep 17, 2021·RNA·Man WuLing-Ling Chen

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Methods Mentioned

BETA
RNA-seq

Software Mentioned

BLAST
CNIT ( Coding - NonCoding Identifying Tool
NONCODEV6
StringTie
PANTHER
STAR
NONCODE
RefSeq
CNIT
Ensembl

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