Novel canine circovirus strains from Thailand: Evidence for genetic recombination

Scientific Reports
Chutchai PiewbangAlbert D M E Osterhaus

Abstract

Canine circoviruses (CanineCV's), belonging to the genus Circovirus of the Circoviridae family, were detected by next generation sequencing in samples from Thai dogs with respiratory symptoms. Genetic characterization and phylogenetic analysis of nearly complete CanineCV genomes suggested that natural recombination had occurred among different lineages of CanineCV's. Similarity plot and bootscaning analyses indicated that American and Chinese viruses had served as major and minor parental viruses, respectively. Positions of recombination breakpoints were estimated using maximum-likelihood frameworks with statistical significant testing. The putative recombination event was located in the Replicase gene, intersecting with open reading frame-3. Analysis of nucleotide changes confirmed the origin of the recombination event. This is the first description of naturally occurring recombinant CanineCV's that have resulted in the circulation of newly emerging CanineCV lineages.

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Citations

Aug 28, 2020·Transboundary and Emerging Diseases·Tuong Nguyen ManhSomporn Techangamsuwan
Jul 12, 2019·Journal of Veterinary Diagnostic Investigation : Official Publication of the American Association of Veterinary Laboratory Diagnosticians, Inc·Herbert J Van KruiningenJoan A Smyth
Oct 18, 2020·Scientific Reports·Sebastian Giraldo-RamirezJulian Ruiz-Saenz
Sep 4, 2020·Veterinary Pathology·Surangkanang ChaiyasakSomporn Techangamsuwan
Jun 10, 2021·Archives of Virology·Lin WangJunwei Ge
Aug 8, 2021·Computational Biology and Chemistry·Moritz KohlsKlaus Jung
Aug 12, 2021·The Veterinary Quarterly·Nguyen Manh TuongSomporn Techangamsuwan

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Datasets Mentioned

BETA
KT946839
KC241984
JQ821392
KJ530972
KT283604

Methods Mentioned

BETA
PCR
PCRs
acetylation

Software Mentioned

3Seq
Chimera
DE
bootscan
MAFFT
CanineCV
SIMPLOT
MaxChi
SiScan
RDP

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