Offspring Microbiomes Differ Across Breeding Sites in a Panmictic Species

Frontiers in Microbiology
Mark Alan Frank GillinghamSimone Sommer

Abstract

High dispersal rates are known to homogenize host's population genetic structure in panmictic species and to disrupt host local adaptation to the environment. Long-distance dispersal might also spread micro-organisms across large geographical areas. However, so far, to which extent selection mechanisms that shape host's population genetics are mirrored in the population structure of the enteric microbiome remains unclear. High dispersal rates and horizontal parental transfer may homogenize bacterial communities between breeding sites (homogeneous hypothesis). Alternatively, strong selection from the local environment may differentiate bacterial communities between breeding sites (heterogeneous hypothesis). Furthermore, selection from age-specific environmental or physiological factors may differentiate the microbiome between juveniles and adults. Here, we analyzed the cloacal bacterial 16S rRNA gene of fledgling greater flamingos, Phoenicopterus roseus, across nine western Mediterranean breeding sites and four breeding seasons (n = 731) and adult birds (n = 27) from a single site. We found that fledgling cloacal microbiome, as measured by alpha diversity, beta diversity, the relative abundance of assigned sequence variants (ASV...Continue Reading

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Citations

Nov 29, 2020·Scientific Reports·Gabrielle L DavidsonJohn L Quinn
Jan 23, 2021·The Journal of Animal Ecology·Gabrielle L DavidsonJohn L Quinn
Nov 30, 2020·The Science of the Total Environment·Mark A F GillinghamSimone Sommer
Feb 20, 2021·Animal Microbiome·Kasun H BodawattaKnud A Jønsson
Jun 27, 2021·Communications Biology·Gloria FackelmannSimone Sommer
Aug 17, 2021·Trends in Microbiology·Kasun H BodawattaKnud A Jønsson
Oct 19, 2021·Molecular Ecology·Kirsty J MacLeodTracy Langkilde
Dec 21, 2021·Frontiers in Microbiology·Nicole E AdamsSuzanne Edmands

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Datasets Mentioned

BETA
KU656649
PRJNA485732

Methods Mentioned

BETA
PCR
Illumina Sequencing

Software Mentioned

btools R package
R
ggplot
R package “ vegan
FastTree
QIIME
R package “
MuMIn R
DADA
PERMANOVA

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