Aug 23, 2014

Omics Pipe: A Computational Framework for Reproducible Multi-Omics Data Analysis

bioRxiv
Kathleen M FischAndrew I. Su

Abstract

Omics Pipe (<https://bitbucket.org/sulab/omics_pipe>) is a computational platform that automates multi-omics data analysis pipelines on high performance compute clusters and in the cloud. It supports best practice published pipelines for RNA-seq, miRNA-seq, Exome-seq, Whole Genome sequencing, ChIP-seq analyses and automatic processing of data from The Cancer Genome Atlas. Omics Pipe provides researchers with a tool for reproducible, open source and extensible next generation sequencing analysis.

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Mentioned in this Paper

Genome
Sequence Determinations, RNA
Research Personnel
Whole Exome Sequencing
Massively-Parallel Sequencing
Analysis
Gene Clusters
Seq protein, Drosophila
Whole Genome Sequencing
MicroRNAs

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