Omics Pipe: A Computational Framework for Reproducible Multi-Omics Data Analysis

BioRxiv : the Preprint Server for Biology
Kathleen M FischAndrew I Su

Abstract

Omics Pipe (<https://bitbucket.org/sulab/omics_pipe>) is a computational platform that automates multi-omics data analysis pipelines on high performance compute clusters and in the cloud. It supports best practice published pipelines for RNA-seq, miRNA-seq, Exome-seq, Whole Genome sequencing, ChIP-seq analyses and automatic processing of data from The Cancer Genome Atlas. Omics Pipe provides researchers with a tool for reproducible, open source and extensible next generation sequencing analysis.

Related Concepts

Gene Clusters
Genome
Glanders
Research Personnel
Sequence Determinations, RNA
Analysis
Seq protein, Drosophila
Whole Genome Sequencing
Whole Exome Sequencing

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