OnD-CRF: predicting order and disorder in proteins using [corrected] conditional random fields.

Bioinformatics
Lixiao Wang, Uwe H Sauer

Abstract

Order and Disorder prediction using Conditional Random Fields (OnD-CRF) is a new method for accurately predicting the transition between structured and mobile or disordered regions in proteins. OnD-CRF applies CRFs relying on features which are generated from the amino acids sequence and from secondary structure prediction. Benchmarking results based on CASP7 targets, and evaluation with respect to several CASP criteria, rank the OnD-CRF model highest among the fully automatic server group. http://babel.ucmp.umu.se/ond-crf/

References

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Citations

Jul 15, 2009·Cell Research·Bo HeA Keith Dunker
Dec 17, 2009·Briefings in Bioinformatics·Zsuzsanna DosztányiIstván Simon
Mar 30, 2012·Nucleic Acids Research·Cecilia AndresenMaria Sunnerhagen
Jun 21, 2011·BMC Bioinformatics·Marcin J MiziantyLukasz Kurgan
Oct 24, 2009·Algorithms for Molecular Biology : AMB·Piero FariselliRita Casadio
Dec 21, 2013·PloS One·Julien BeckerLouis Wehenkel
Aug 1, 2015·International Journal of Molecular Sciences·Sheng WangQingming Tang
Feb 2, 2010·Biochimica Et Biophysica Acta·Vladimir N Uversky, A Keith Dunker
Jun 25, 2013·Molecular Reproduction and Development·Valérie VergéGérard Peaucellier
Jun 8, 2012·Proteins·Mark A SeegerSarah E Rice
Sep 20, 2011·Proteins·Bohdan MonastyrskyyAndriy Kryshtafovych
Nov 4, 2015·Computational and Mathematical Methods in Medicine·Zhiqiang ZengZhiling Hong
Sep 8, 2015·Journal of Molecular Biology·Nora B CroninDavid Barford
Nov 22, 2011·Molecular BioSystems·Mohamed F GhalwashZoran Obradović
May 28, 2013·BioMed Research International·Tong-Hui ZhaoYu-Dong Cai
Mar 29, 2013·Journal of Biomolecular Structure & Dynamics·Xiao Fan, Lukasz Kurgan
Oct 21, 2016·ELife·Sandra PostelEric J Sundberg
Mar 27, 2015·Molecular Biology of the Cell·Anatoly V ZaytsevEkaterina L Grishchuk
Aug 24, 2018·International Journal of Molecular Sciences·Yumeng LiuBin Liu
Sep 1, 2016·IEEE/ACM Transactions on Computational Biology and Bioinformatics·Hongjie WuMin Jiang
Oct 31, 2015·PloS One·Sumaiya Iqbal, Md Tamjidul Hoque
Feb 25, 2017·Intrinsically Disordered Proteins·Philippe LieutaudSonia Longhi
Apr 1, 2013·Intrinsically Disordered Proteins·Marcin J MiziantyLukasz Kurgan
Jun 8, 2017·Cellular and Molecular Life Sciences : CMLS·Fanchi MengLukasz Kurgan
Nov 19, 2013·Biophysics Reviews·Mark A Seeger, Sarah E Rice

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Methods Mentioned

BETA
NMR

Software Mentioned

SSpro
GeneSilicoMetaServer
CRF
OnD
ISTZORAN
DRIPPRED
DISpro

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