P-MartCancer-Interactive Online Software to Enable Analysis of Shotgun Cancer Proteomic Datasets

Cancer Research
Bobbie-Jo M Webb-RobertsonKarin D Rodland

Abstract

P-MartCancer is an interactive web-based software environment that enables statistical analyses of peptide or protein data, quantitated from mass spectrometry-based global proteomics experiments, without requiring in-depth knowledge of statistical programming. P-MartCancer offers a series of statistical modules associated with quality assessment, peptide and protein statistics, protein quantification, and exploratory data analyses driven by the user via customized workflows and interactive visualization. Currently, P-MartCancer offers access and the capability to analyze multiple cancer proteomic datasets generated through the Clinical Proteomics Tumor Analysis Consortium at the peptide, gene, and protein levels. P-MartCancer is deployed as a web service (https://pmart.labworks.org/cptac.html), alternatively available via Docker Hub (https://hub.docker.com/r/pnnl/pmart-web/). Cancer Res; 77(21); e47-50. ©2017 AACR.

References

May 6, 2008·Bioinformatics·Ashoka D PolpitiyaRichard D Smith
Aug 20, 2011·Bioinformatics·Melissa M MatzkeBobbie-Jo M Webb-Robertson
Nov 30, 2014·Molecular & Cellular Proteomics : MCP·Bobbie-Jo M Webb-RobertsonKatrina M Waters
Feb 12, 2015·Cancer Research·Aaron S GajadharUNKNOWN Clinical Proteomic Tumor Analysis Consortium
Jun 26, 2015·Scientific Data·Robbert J C SlebosDaniel C Liebler
Jun 3, 2016·Nature·Philipp MertinsUNKNOWN NCI CPTAC

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Citations

Jan 12, 2021·Frontiers in Bioengineering and Biotechnology·Yuqian GaoKristin E Burnum-Johnson
Jan 23, 2019·Journal of Proteome Research·Lisa M BramerBobbie-Jo M Webb-Robertson

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