PalmXplore: oil palm gene database

Database : the Journal of Biological Databases and Curation
Nik Shazana Nik Mohd SanusiEng-Ti Leslie Low

Abstract

A set of Elaeis guineensis genes had been generated by combining two gene prediction pipelines: Fgenesh++ developed by Softberry and Seqping by the Malaysian Palm Oil Board. PalmXplore was developed to provide a scalable data repository and a user-friendly search engine system to efficiently store, manage and retrieve the oil palm gene sequences and annotations. Information deposited in PalmXplore includes predicted genes, their genomic coordinates, as well as the annotations derived from external databases, such as Pfam, Gene Ontology and Kyoto Encyclopedia of Genes and Genomes. Information about genes related to important traits, such as those involved in fatty acid biosynthesis (FAB) and disease resistance, is also provided. The system offers Basic Local Alignment Search Tool homology search, where the results can be downloaded or visualized in the oil palm genome browser (MYPalmViewer). PalmXplore is regularly updated offering new features, improvements to genome annotation and new genomic sequences. The system is freely accessible at http://palmxplore.mpob.gov.my.

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Citations

Sep 24, 2018·Journal of Medical Genetics·Whitney L Wooderchak-DonahuePinar Bayrak-Toydemir
Jun 28, 2020·Plant Cell Reports·Norashikin SarpanMeilina Ong-Abdullah
Nov 7, 2019·PeerJ·Stepan PachganovTatiana V Tatarinova
Jun 21, 2020·Scientific Reports·Javier HerreroEnrique Ritter
Dec 6, 2020·Scientific Reports·Le WangGen Hua Yue
Apr 16, 2021·Physiology and Molecular Biology of Plants : an International Journal of Functional Plant Biology·B Kalyana BabuH P Bhagya

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