Parcellation of the neonatal cortex using Surface-based Melbourne Children's Regional Infant Brain atlases (M-CRIB-S).

Scientific Reports
Chris AdamsonDeanne K. Thompson

Abstract

Longitudinal studies measuring changes in cortical morphology over time are best facilitated by parcellation schemes compatible across all life stages. The Melbourne Children's Regional Infant Brain (M-CRIB) and M-CRIB 2.0 atlases provide voxel-based parcellations of the cerebral cortex compatible with the Desikan-Killiany (DK) and the Desikan-Killiany-Tourville (DKT) cortical labelling schemes. This study introduces surface-based versions of the M-CRIB and M-CRIB 2.0 atlases, termed M-CRIB-S(DK) and M-CRIB-S(DKT), with a pipeline for automated parcellation utilizing FreeSurfer and developing Human Connectome Project (dHCP) tools. Using T2-weighted magnetic resonance images of healthy neonates (n = 58), we created average spherical templates of cortical curvature and sulcal depth. Manually labelled regions in a subset (n = 10) were encoded into the spherical template space to construct M-CRIB-S(DK) and M-CRIB-S(DKT) atlases. Labelling accuracy was assessed using Dice overlap and boundary discrepancy measures with leave-one-out cross-validation. Cross-validated labelling accuracy was high for both atlases (average regional Dice = 0.79-0.83). Worst-case boundary discrepancy instances ranged from 9.96-10.22 mm, which appeared to b...Continue Reading

References

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May 8, 2002·Nature Reviews. Neuroscience·Matthew BrettAdrian M Owen
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Sep 19, 2015·Neuroinformatics·Wai Yen LohDeanne K Thompson
Oct 27, 2015·NeuroImage·Antonios MakropoulosDaniel Rueckert
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Mar 6, 2019·IEEE Transactions on Medical Imaging·Li WangDinggang Shen

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Methods Mentioned

BETA
PMA

Software Mentioned

neonatal
dHCP
CRIB
sphere
ca
train
Deformable
inflate
mris
compatible

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