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Pathset graphs: a novel approach for comprehensive utilization of paired reads in genome assembly

Journal of Computational Biology : a Journal of Computational Molecular Cell Biology

Jul 19, 2012

Son PhamMax A Alekseyev

Abstract

One of the key advances in genome assembly that has led to a significant improvement in contig lengths has been improved algorithms for utilization of paired reads (mate-pairs). While in most assemblers, mate-pair information is used in a post-processing step, the recently proposed Pair...read more

Mentioned in this Paper

Alkalescens-Dispar Group
Genome
Genome Assembly Sequence
Sequence Determinations, DNA
Contig Mapping
Online Mendelian Inheritance In Man
7
59
Paper Details
References
  • References13
  • Citations7
12
  • References13
  • Citations7
1

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© 2020 Meta ULC. All rights reserved

Pathset graphs: a novel approach for comprehensive utilization of paired reads in genome assembly

Journal of Computational Biology : a Journal of Computational Molecular Cell Biology

Jul 19, 2012

Son PhamMax A Alekseyev

PMID: 22803627

DOI: 10.1089/cmb.2012.0098

Abstract

One of the key advances in genome assembly that has led to a significant improvement in contig lengths has been improved algorithms for utilization of paired reads (mate-pairs). While in most assemblers, mate-pair information is used in a post-processing step, the recently proposed Pair...read more

Mentioned in this Paper

Alkalescens-Dispar Group
Genome
Genome Assembly Sequence
Sequence Determinations, DNA
Contig Mapping
Online Mendelian Inheritance In Man
7
59

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Myocardial Stunning

Myocardial stunning is a mechanical dysfunction that persists after reperfusion of previously ischemic tissue in the absence of irreversible damage including myocardial necrosis. Here is the latest research.

Related Papers

Journal of Computational Biology : a Journal of Computational Molecular Cell Biology

Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers

Journal of Computational Biology : a Journal of Computational Molecular Cell BiologyOctober 18, 2011
Paul MedvedevP A Pevzner
Bioinformatics

PE-Assembler: de novo assembler using short paired-end reads

BioinformaticsDecember 15, 2010
Pramila Nuwantha Ariyaratne, Wing-Kin Sung
Paper Details
References
  • References13
  • Citations7
12
  • References13
  • Citations7
1

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