PCA-based groupwise image registration for quantitative MRI

Medical Image Analysis
W HuizingaStefan Klein

Abstract

Quantitative magnetic resonance imaging (qMRI) is a technique for estimating quantitative tissue properties, such as the T1 and T2 relaxation times, apparent diffusion coefficient (ADC), and various perfusion measures. This estimation is achieved by acquiring multiple images with different acquisition parameters (or at multiple time points after injection of a contrast agent) and by fitting a qMRI signal model to the image intensities. Image registration is often necessary to compensate for misalignments due to subject motion and/or geometric distortions caused by the acquisition. However, large differences in image appearance make accurate image registration challenging. In this work, we propose a groupwise image registration method for compensating misalignment in qMRI. The groupwise formulation of the method eliminates the requirement of choosing a reference image, thus avoiding a registration bias. The method minimizes a cost function that is based on principal component analysis (PCA), exploiting the fact that intensity changes in qMRI can be described by a low-dimensional signal model, but not requiring knowledge on the specific acquisition model. The method was evaluated on 4D CT data of the lungs, and both real and synt...Continue Reading

References

Oct 26, 1999·IEEE Transactions on Medical Imaging·D RueckertD J Hawkes
Jun 19, 2001·NMR in Biomedicine·S CavassilaD Graveron-Demilly
Sep 25, 2002·Medical Image Analysis·J-F ManginI Bloch
Dec 19, 2002·NMR in Biomedicine·Peter J Basser, Derek K Jones
Jul 6, 2004·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Daniel R MessroghliJohn P Ridgway
May 11, 2006·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·A LeemansP Parizel
Oct 13, 2006·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Geoff J M ParkerGordon C Jayson
Oct 31, 2007·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Giovanni A BuonaccorsiGeoffrey J M Parker
Feb 12, 2008·IEEE Transactions on Image Processing : a Publication of the IEEE Signal Processing Society·P Thévenaz, M Unser
Mar 7, 2009·Physics in Medicine and Biology·Richard CastilloThomas Guerrero
Nov 20, 2009·IEEE Transactions on Medical Imaging·Stefan KleinJosien P W Pluim
Apr 7, 2011·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Jacques-Donald TournierAlexander Leemans
Jul 24, 2012·Magnetic Resonance Imaging·Mark MuziPaul E Kinahan
Feb 8, 2013·Physics in Medicine and Biology·V DelmonD Sarrut
Mar 23, 2013·IEEE Transactions on Pattern Analysis and Machine Intelligence·Christian Wachinger, Nassir Navab
Dec 23, 2014·IEEE Transactions on Medical Imaging·Dirk H J Poot, Stefan Klein
Jun 11, 2015·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Cornelius von MorzeJohn Kurhanewicz

❮ Previous
Next ❯

Citations

Jul 28, 2016·Analytical Chemistry·Jia Xu, Steven R Van Doren
Sep 24, 2016·IEEE Transactions on Medical Imaging·Gabriel Ramos-LlordenJan Sijbers
Jan 17, 2017·IEEE Transactions on Image Processing : a Publication of the IEEE Signal Processing Society·Marco Tektonidis, Karl Rohr
Jun 24, 2017·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Jakub CerankaJef Vandemeulebroucke
Nov 8, 2017·Journal of Cardiovascular Magnetic Resonance : Official Journal of the Society for Cardiovascular Magnetic Resonance·Georg R SpinnerSebastian Kozerke
Apr 5, 2019·Journal of Magnetic Resonance Imaging : JMRI·Gani GashiMatthias J Betz
May 17, 2019·PloS One·Mariëlle J A JansenJosien P W Pluim
Oct 1, 2019·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Oliver J Gurney-ChampionAndreas Wetscherek
Nov 20, 2019·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Dimitra FlouriAndrew Melbourne
Dec 15, 2019·Journal of Magnetic Resonance Imaging : JMRI·Jaume Coll-FontSila Kurugol
Feb 29, 2020·Journal of Magnetic Resonance Imaging : JMRI·Stephan J BredaEdwin H G Oei
Mar 18, 2020·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Isabell K BonesClemens Bos
Dec 24, 2019·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Christian T StoeckSebastian Kozerke
May 14, 2016·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Martijn FroelingAlexander Leemans
Dec 5, 2019·Journal of Magnetic Resonance Imaging : JMRI·Anneloes de BoerHans Hoogduin
Oct 1, 2020·Alzheimer's & Dementia : Translational Research & Clinical Interventions·Anna E LeeuwisWiesje M van der Flier
Aug 25, 2017·Physics in Medicine and Biology·M J A JansenJ P W Pluim
Oct 12, 2019·Journal of Applied Clinical Medical Physics·Sang Ho LeeNeelam Tyagi
Apr 25, 2020·Sensors·Nefeli LamprinouEmmanouil Z Psarakis
Jul 12, 2017·Medical Physics·Harrison KimDesiree E Morgan
Oct 6, 2020·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Rebeca Echeverria-ChascoMaría A Fernández-Seara
Dec 1, 2020·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Suzanne L FranklinSophie Schmid
Jan 1, 2021·Journal of Magnetic Resonance Imaging : JMRI·Caroline M ColbertKim-Lien Nguyen
Feb 5, 2021·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Isabell K BonesClemens Bos
Dec 6, 2017·NeuroImage·W HuizingaUNKNOWN Alzheimer's Disease Neuroimaging Initiative
Apr 9, 2021·NMR in Biomedicine·Caroline M ColbertKim-Lien Nguyen
Oct 28, 2019·JACC. Clinical Electrophysiology·Marek SramkoKatja Zeppenfeld
Jun 15, 2021·Journal of Magnetic Resonance Imaging : JMRI·Suzanne L FranklinMatthias J P van Osch
Aug 15, 2021·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Jaume Coll-FontChristopher T Nguyen
Oct 14, 2021·Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine·Verónica Aramendía-VidaurretaMaría A Fernández-Seara

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.