Peptide retention time prediction

Mass Spectrometry Reviews
Luminita Moruz, Lukas Käll

Abstract

Most methods for interpreting data from shotgun proteomics experiments are to large degree dependent on being able to predict properties of peptide-ions. Often such predicted properties are limited to molecular mass and fragment spectra, but here we put focus on a perhaps underutilized property, a peptide's chromatographic retention time. We review a couple of different principles of retention time prediction,and their applications within computational proteomics. © 2016 Wiley Periodicals, Inc. Mass Spec Rev 36:615-623, 2017.

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Citations

Jul 27, 2018·Journal of Separation Science·Yassene Mohammed, Magnus Palmblad
Feb 2, 2018·Critical Reviews in Food Science and Nutrition·Domancar Orona-TamayoOctavio Paredes-López
Jul 2, 2019·PLoS Computational Biology·Albert Tian ChenNikolai Slavov
Jun 30, 2019·Molecular & Cellular Proteomics : MCP·Shenheng GuanBin Ma
Dec 25, 2019·Analytical and Bioanalytical Chemistry·Anne J KleinnijenhuisYohann Wittrant
Aug 30, 2020·Analytical and Bioanalytical Chemistry·Sergey OsipenkoYury Kostyukevich
Sep 6, 2018·Algorithms for Molecular Biology : AMB·Yves FrankValentin Venzin
Dec 30, 2020·Molecular & Cellular Proteomics : MCP·Zilu Ye, Sergey Y Vakhrushev
Feb 2, 2021·Journal of Proteome Research·Carina VillacrésOleg V Krokhin
Oct 1, 2019·Molecular & Cellular Proteomics : MCP·Shenheng GuanBin Ma
May 1, 2021·Molecules : a Journal of Synthetic Chemistry and Natural Product Chemistry·Mantas VaškevičiusLiudas Šlepikas
May 1, 2021·International Journal of Molecular Sciences·Roman SzucsJasna Hradski
Jul 30, 2021·Journal of the American Society for Mass Spectrometry·Rong HuangWenzhang Chen
Oct 22, 2020·Analytical Chemistry·Paul R HaddadRoman Szücs
Sep 5, 2019·Journal of Proteome Research·J Scott P McCain, Erin M Bertrand
Aug 20, 2021·Cell Systems·Matthias MannMaximilian T Strauss
Dec 18, 2021·Expert Review of Proteomics·Yi YangLiang Qiao

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