Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism

Molecular Systems Biology
Daniel D SeatonWilhelm Gruissem

Abstract

Plants respond to seasonal cues such as the photoperiod, to adapt to current conditions and to prepare for environmental changes in the season to come. To assess photoperiodic responses at the protein level, we quantified the proteome of the model plant Arabidopsis thaliana by mass spectrometry across four photoperiods. This revealed coordinated changes of abundance in proteins of photosynthesis, primary and secondary metabolism, including pigment biosynthesis, consistent with higher metabolic activity in long photoperiods. Higher translation rates in the day than the night likely contribute to these changes, via an interaction with rhythmic changes in RNA abundance. Photoperiodic control of protein levels might be greatest only if high translation rates coincide with high transcript levels in some photoperiods. We term this proposed mechanism "translational coincidence", mathematically model its components, and demonstrate its effect on the Arabidopsis proteome. Datasets from a green alga and a cyanobacterium suggest that translational coincidence contributes to seasonal control of the proteome in many phototrophic organisms. This may explain why many transcripts but not their cognate proteins exhibit diurnal rhythms.

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Citations

Mar 29, 2019·The Plant Journal : for Cell and Molecular Biology·R Glen UhrigWilhelm Gruissem
Apr 20, 2019·Journal of Experimental Botany·Yi-Chen PaoTsu-Wei Chen
Jul 14, 2020·The Plant Journal : for Cell and Molecular Biology·Anika KükenZoran Nikoloski
Sep 6, 2018·Plant, Cell & Environment·Anna FlisMark Stitt
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Dec 6, 2020·Plant, Cell & Environment·R Glen UhrigWilhelm Gruissem
Jan 14, 2020·Plant Science : an International Journal of Experimental Plant Biology·Guillaume TcherkezMichel Zivy
Feb 24, 2021·Emerging Topics in Life Sciences·Amanda L Smythers, Leslie M Hicks
Mar 7, 2021·Genes·Jiapei YanDavid E Somers
Mar 16, 2021·Plant Physiology·J Romário F de MeloNathalie Verbruggen
Mar 31, 2021·The Plant Journal : for Cell and Molecular Biology·Devang MehtaR Glen Uhrig
May 31, 2021·The New Phytologist·Américo J C VianaMichel Vincentz
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Aug 31, 2021·Current Opinion in Plant Biology·Joshua M GendronWei Liu
Dec 18, 2019·Journal of Molecular Biology·Daniel Mauvoisin, Frédéric Gachon

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Datasets Mentioned

BETA
ATCC51142
PCC7942

Methods Mentioned

BETA
electrophoresis

Software Mentioned

R
Mascot
Progenesis
Progenesis LCMS
DIURNAL
R Core Team

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