Phylogenetic comparative analysis and the secondary structure of ribonuclease P RNA--a review.

Gene
N R PaceB D James

Abstract

The most incisive a priori approach to inferring the higher order structure of large RNAs has proven to be the use of phylogenetic comparisons. This article provides guidelines to the method, using as an illustration the elucidation of the secondary structure of the catalytic RNA subunit of ribonuclease P (RNase P). The resultant structure is compared to the possibilities that are predicted thermodynamically for the RNase P RNA sequences of nine eubacteria.

References

Sep 1, 1978·Nucleic Acids Research·G M StudnickaW A Salser
Jan 1, 1978·Cold Spring Harbor Symposia on Quantitative Biology·W Salser
Aug 7, 1975·Nature·G E Fox, C R Woese
May 24, 1985·Science·M Baer, S Altman
Dec 1, 1986·Proceedings of the National Academy of Sciences of the United States of America·S M FreierD H Turner
Oct 1, 1987·Proceedings of the National Academy of Sciences of the United States of America·N P LawrenceS Altman
Jan 1, 1988·Nucleic Acids Research·E DamsR De Wachter
Jan 1, 1988·Annual Review of Biophysics and Biophysical Chemistry·D H TurnerS M Freier
Jan 1, 1987·Cold Spring Harbor Symposia on Quantitative Biology·D H TurnerR Kierzek
Jan 10, 1986·Nucleic Acids Research·A L Williams, I Tinoco
Jan 1, 1987·Journal of Molecular Evolution·E GilsonM Hofnung
Jan 21, 1988·Nature·J D PuglisiI Tinoco
Mar 11, 1988·Nucleic Acids Research·K E SidmanL T Hunt
Jan 1, 1988·Nucleic Acids Research·R R Gutell, G E Fox
Jan 1, 1987·Nucleic Acids Research·M SprinzlT Vorderwülbecke
Mar 11, 1985·Nucleic Acids Research·C W PleijL Bosch
Apr 24, 1981·Science·H F Noller, C R Woese
Jan 1, 1983·Cold Spring Harbor Symposia on Quantitative Biology·D L DanielsA R Coulson
Jul 1, 1983·Proceedings of the National Academy of Sciences of the United States of America·T R CechP S Perlman
Jan 11, 1984·Nucleic Acids Research·J DevereuxO Smithies
Dec 23, 1982·Nature·R W DaviesC Scazzocchio

❮ Previous
Next ❯

Citations

May 1, 1993·BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology·U von Ahsen, R Schroeder
Oct 5, 1991·Journal of Molecular Biology·B Clouet d'OrvalE Brody
Jun 1, 1991·Biochimie·J W Brown, N R Pace
Sep 19, 2006·Nature Reviews. Microbiology·Alexei V Kazantsev, Norman R Pace
Dec 25, 1991·Nucleic Acids Research·P B HackettR B Petersen
Feb 11, 1993·Nucleic Acids Research·J W BrownN R Pace
Sep 1, 1994·Nucleic Acids Research·J W BrownN R Pace
Apr 11, 1995·Nucleic Acids Research·M McCormick-Graham, D P Romero
Dec 1, 1996·Nucleic Acids Research·E S HaasJ W Brown
Feb 12, 1998·Nucleic Acids Research·P De Rijk, R De Wachter
May 23, 2001·Nucleic Acids Research·J GorodkinG D Stormo
Oct 25, 2012·Nucleic Acids Research·Xiaodong QiJulian J-L Chen
May 28, 2010·Cold Spring Harbor Perspectives in Biology·Eric WesthofFabrice Jossinet
Mar 27, 2007·Cold Spring Harbor Symposia on Quantitative Biology·S R Eddy
Nov 6, 2013·Acta Crystallographica. Section D, Biological Crystallography·Marco MarciaAnna Marie Pyle
Jan 25, 2006·Journal of Nanoscience and Nanotechnology·Peixuan Guo
Apr 21, 2007·BMC Bioinformatics·Arif Ozgun HarmanciDavid H Mathews
Apr 7, 2005·RNA·Steven M MarquezNorman R Pace
Sep 1, 2004·RNA·Yong Li, Sidney Altman
Jul 27, 2001·Proceedings of the National Academy of Sciences of the United States of America·J Miranda-RíosM Soberón
Aug 12, 2004·Proceedings of the National Academy of Sciences of the United States of America·Alex CoventryBonnie Berger
Jun 28, 2015·Methods : a Companion to Methods in Enzymology·Walter N Moss, Joan A Steitz
Oct 20, 1991·Journal of Molecular Biology·A Fraile, F García-Arenal
Jul 1, 1990·Journal of Structural Biology·D Anderson, J W Bodley
May 9, 2006·Trends in Biochemical Sciences·Donald EvansNorman R Pace
Jun 18, 2010·Methods : a Companion to Methods in Enzymology·Justin T Low, Kevin M Weeks
Sep 23, 2003·BMC Bioinformatics·Robert J Klein, Sean R Eddy
Jan 21, 2014·RNA Biology·Walter N MossJoan A Steitz
Oct 16, 2012·RNA Biology·Walter N MossDouglas H Turner
Jul 10, 2004·Current Biology : CB·Alain T DandjinouRaymund J Wellinger
Mar 18, 2000·Cell·J L ChenC W Greider

❮ Previous
Next ❯

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