Phylogenetic methods in natural product research

Natural Product Reports
Imke Schmitt, F Keith Barker

Abstract

Natural products researchers are increasingly employing evolutionary analyses of genes and gene products that rely on phylogenetic trees. The field of phylogenetic inference and of evolutionary analyses based on phylogenies is growing at an amazing rate, making it difficult to keep up with the latest methodologies. Here, we summarize phylogenetic applications in natural products research, and review methods and software useful for carrying out analyses inferring or using phylogenetic trees. We include an updated overview of available alignment methods and programs, as well as a selection of some useful phylogenetic analysis tools. This review covers primarily the period 2000-2009 for applications of phylogenetic methods in natural product research, and 1990-2009 for phylogenetic methods, with some references going back to the 1960s.

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Citations

Apr 18, 2015·Pharmaceutical Biology·Carlos Fernández-MorianoAna Crespo
Jul 21, 2015·Phytochemistry·Susan N RichardsonJ David Miller
Feb 16, 2017·Journal of Natural Products·Huzefa A RajaNicholas H Oberlies
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Jun 9, 2016·Natural Product Reports·Nadine ZiemertTilmann Weber
Jan 25, 2019·Drug Discoveries & Therapeutics·Zhongyue LiYuemao Shen
Sep 3, 2019·Natural Product Reports·Martina AdamekNadine Ziemert
Dec 12, 2019·Natural Product Reports·Marc G ChevretteFrancisco Barona-Gómez
May 13, 2020·Proceedings of the National Academy of Sciences of the United States of America·Laura HolzmeyerJan Schnitzler
Nov 26, 2016·Journal of Industrial Microbiology & Biotechnology·Hahk-Soo Kang
Dec 15, 2016·Bioorganic & Medicinal Chemistry·Tamam El-ElimatNicholas H Oberlies

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