Phylogenetic placement of Hanseniaspora-Kloeckera species using multigene sequence analysis with taxonomic implications: descriptions of Hanseniaspora pseudoguilliermondii sp. nov. and Hanseniaspora occidentalis var. citrica var. nov

International Journal of Systematic and Evolutionary Microbiology
Neza CadezMaudy Th Smith

Abstract

Two protein-coding genes, actin and translation elongation factor-1alpha (EF-1alpha), as well as two ribosomal gene regions, D1/D2 domains of the large subunit and both internal transcribed spacers including the 5.8S gene region, were evaluated regarding their usefulness for reconstruction of phylogenetic relationships in the Hanseniaspora-Kloeckera species group. This included analyses of sequence divergence values, heterogeneity of evolutionary rates and the reliability of the inferred trees. Both protein-coding genes showed greater capacities to resolve at the strain level and between the closely related species of Hanseniaspora-Kloeckera, compared with the ribosomal gene regions. However, to obtain a fully resolved and reliable phylogenetic tree that reflected the biological relationships it was necessary to combine three congruent sequence datasets. The novel species Hanseniaspora pseudoguilliermondii sp. nov. (type strain CBS 8772T) is described as a result of the application of various molecular approaches to delimit species. Furthermore, incongruent gene genealogies of genetically divergent strains of Hanseniaspora occidentalis, as determined by amplified fragment length polymorphism analysis and DNA-DNA reassociation m...Continue Reading

References

Jan 1, 1978·Antonie van Leeuwenhoek·S A MeyerF P Simione
Apr 1, 1989·Antonie van Leeuwenhoek·W I GolubevJ L Kock
Nov 11, 1995·Nucleic Acids Research·P VosM Kuiper
Dec 15, 1993·Proceedings of the National Academy of Sciences of the United States of America·S L Baldauf, J D Palmer
Oct 7, 1998·International Journal of Food Microbiology·T DeakS Westphal
Jan 27, 1999·Bioinformatics·D Posada, K A Crandall
Jan 6, 2000·Molecular Phylogenetics and Evolution·A M Kretzer, T D Bruns
May 29, 2000·International Journal of Systematic and Evolutionary Microbiology·C BellochE Barrio
Dec 16, 2000·Fungal Genetics and Biology : FG & B·J W TaylorM C Fisher
Feb 24, 2001·International Journal of Systematic and Evolutionary Microbiology·R M Bush, K D Everett
Aug 9, 2001·International Journal of Systematic and Evolutionary Microbiology·H M DanielW Meyer
Dec 26, 2001·Bioinformatics·S KumarM Nei
Jan 5, 2002·Antonie van Leeuwenhoek·B Esteve-ZarzosoA Quero
Aug 2, 2003·International Journal of Food Microbiology·H-M Daniel, W Meyer
Jul 1, 1985·Evolution; International Journal of Organic Evolution·Joseph Felsenstein

❮ Previous
Next ❯

Citations

Aug 14, 2012·Applied and Environmental Microbiology·James Angus ChandlerArtyom Kopp
Jul 23, 2013·International Journal of Food Microbiology·Michael CrafackDennis S Nielsen
Apr 26, 2014·International Journal of Systematic and Evolutionary Microbiology·Neža CadežCarlos A Rosa
Aug 16, 2011·International Journal of Systematic and Evolutionary Microbiology·Chin-Feng ChangChing-Fu Lee
Jan 10, 2012·International Journal of Systematic and Evolutionary Microbiology·Neža ČadežGábor Péter
Sep 17, 2011·Science·Ines A DrinnenbergDavid P Bartel
May 29, 2009·FEMS Yeast Research·Heide-Marie DanielLuc De Vuyst
May 8, 2018·Folia Microbiologica·Marilinda LorenziniGiacomo Zapparoli
Dec 12, 2018·Nature Communications·Paola BisignanoMichael Grabe
Feb 6, 2017·Genome Announcements·Isabel SeixasNuno P Mira
Jun 25, 2020·Antonie van Leeuwenhoek·Neža ČadežGábor Péter
Mar 16, 2021·International Journal of Systematic and Evolutionary Microbiology·Ze LiuQi-Ming Wang

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.