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PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees

BMC Bioinformatics

Sep 22, 2009

Philippe GouretPierre Pontarotti

Abstract

To effectively apply evolutionary concepts in genome-scale studies, large numbers of phylogenetic trees have to be automatically analysed, at a level approaching human expertise. Complex architectures must be recognized within the trees, so that associated information can be extracted. ...read more

Mentioned in this Paper

Genome
Phylogeny
Computer Programs and Programming
STEP 2
Genomics
Protein Families Database
Gene Duplication Abnormality
Automate (invertebrate)
Macaca mulatta
Homologous Gene
1
73
Paper Details
References
  • References17
  • Citations28
12
  • References17
  • Citations28
123

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PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees

BMC Bioinformatics

Sep 22, 2009

Philippe GouretPierre Pontarotti

PMID: 19765311

DOI: 10.1186/1471-2105-10-298

Abstract

To effectively apply evolutionary concepts in genome-scale studies, large numbers of phylogenetic trees have to be automatically analysed, at a level approaching human expertise. Complex architectures must be recognized within the trees, so that associated information can be extracted. ...read more

Mentioned in this Paper

Genome
Phylogeny
Computer Programs and Programming
STEP 2
Genomics
Protein Families Database
Gene Duplication Abnormality
Automate (invertebrate)
Macaca mulatta
Homologous Gene
1
73

Feeds With Similar Papers

Genetic Speciation

Speciation depends on the genetic evolution of reproductive barriers that allow populations to diverge from each other. Discover the latest research on Genetic Speciation here.

Chromosomal Duplication

Chromosomal duplication is a result of extra genetic material within the area of the chromosome. The duplication may have no effect or may be expressed in the phenotype of that individual. Some duplications are thought to be of evolutionary selection. Discover the latest research on chromosomal duplication here.

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Paper Details
References
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  • Citations28
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