PIANA: protein interactions and network analysis

Bioinformatics
Ramon AraguesBaldo Oliva

Abstract

We present a software framework and tool called Protein Interactions And Network Analysis (PIANA) that facilitates working with protein interaction networks by (1) integrating data from multiple sources, (2) providing a library that handles graph-related tasks and (3) automating the analysis of protein-protein interaction networks. PIANA can also be used as a stand-alone application to create protein interaction networks and perform tasks such as predicting protein interactions and helping to identify spots in a 2D electrophoresis gel. PIANA is under the GNU GPL. Source code, database and detailed documentation may be freely downloaded from http://sbi.imim.es/piana.

References

Jan 10, 2003·Nucleic Acids Research·Christian von MeringBerend Snel
Mar 7, 2003·Genome Biology·Bobby-Joe BreitkreutzMike Tyers
Mar 22, 2003·Current Opinion in Cell Biology·Martijn A HuynenPeer Bork
Jul 2, 2003·Current Opinion in Structural Biology·Lukasz Salwinski, David Eisenberg
Sep 13, 2003·BMC Bioinformatics·Roman L TatusovDarren A Natale
Dec 19, 2003·Nucleic Acids Research·Lukasz SalwinskiDavid Eisenberg
Mar 30, 2004·Proteomics·Soon-Hyung YookAlbert-László Barabási
Sep 7, 2004·Bioinformatics·Florian IragneDavid Sherman
Nov 9, 2004·Bioinformatics·Philipp PagelDmitrij Frishman
Dec 21, 2004·Nucleic Acids Research·C AlfaranoC W V Hogue
May 11, 2005·Proceedings of the National Academy of Sciences of the United States of America·Jordi EspadalerBaldomero Oliva
Jun 28, 2005·Nucleic Acids Research·Zhenjun HuCharles Delisi
Jul 29, 2005·Nature·Andy J MinnJoan Massagué
Oct 11, 2005·Nucleic Acids Research·Zhilei Chen, Huimin Zhao

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Citations

Oct 20, 2007·Nature Protocols·Melissa S ClineGary D Bader
Jun 20, 2012·Molecular BioSystems·Rebeca Sanz-PamplonaAngels Sierra
Mar 6, 2012·Omics : a Journal of Integrative Biology·Joan Planas-IglesiasBaldo Oliva
Jun 8, 2007·Bioinformatics·Lukasz Salwinski, David Eisenberg
May 8, 2009·Bioinformatics·Hagen BlankenburgMario Albrecht
Apr 10, 2009·Bioinformatics·Oriol FornesBaldo Oliva
Nov 10, 2009·Nucleic Acids Research·Arnaud CeolGianni Cesareni
Jul 6, 2011·Nucleic Acids Research·Boris RevaChris Sander
Jun 19, 2008·Philosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences·Martin Hofmann-ApitiusChristoph M Friedrich
Oct 27, 2011·Science Signaling·Nir YosefRoded Sharan
Jan 29, 2010·BMC Bioinformatics·Javier Garcia-GarciaBaldo Oliva
Nov 15, 2006·BMC Bioinformatics·Ethan G CeramiChris Sander
Apr 5, 2007·BMC Bioinformatics·Fátima Al-ShahrourJoaquín Dopazo
Mar 29, 2008·BMC Bioinformatics·Ramon AraguesBaldo Oliva
Oct 1, 2008·BMC Bioinformatics·Sabry RazickIan M Donaldson
Jan 19, 2011·BMC Genomics·Douglas V CancheriniSandro J de Souza
Dec 7, 2006·Source Code for Biology and Medicine·Christopher BesemannBirgit M Prüss
Oct 19, 2007·PLoS Computational Biology·Ramon AraguesBaldo Oliva
May 17, 2008·Nucleic Acids Research·Daniel AguilarFabien Campagne
May 1, 2012·Molecular Informatics·Javier Garcia-GarciaBaldo Oliva
May 4, 2010·IEEE Transactions on Information Technology in Biomedicine : a Publication of the IEEE Engineering in Medicine and Biology Society·Siegfried BenknerSteven Wood
Jan 1, 2012·Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America·Adrian E RafteryKa Yee Yeung

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