PMD: A Resource for Archiving and Analyzing Protein Microarray data

Scientific Reports
Zhaowei XuSheng-Ce Tao

Abstract

Protein microarray is a powerful technology for both basic research and clinical study. However, because there is no database specifically tailored for protein microarray, the majority of the valuable original protein microarray data is still not publically accessible. To address this issue, we constructed Protein Microarray Database (PMD), which is specifically designed for archiving and analyzing protein microarray data. In PMD, users can easily browse and search the entire database by experimental name, protein microarray type, and sample information. Additionally, PMD integrates several data analysis tools and provides an automated data analysis pipeline for users. With just one click, users can obtain a comprehensive analysis report for their protein microarray data. The report includes preliminary data analysis, such as data normalization, candidate identification, and an in-depth bioinformatics analysis of the candidates, which include functional annotation, pathway analysis, and protein-protein interaction network analysis. PMD is now freely available at www.proteinmicroarray.cn.

References

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Citations

Sep 19, 2020·BMC Bioinformatics·Dmytro FishmanHedi Peterson
Aug 31, 2019·Expert Review of Proteomics·Huan QiSheng-Ce Tao
May 21, 2021·Frontiers in Immunology·Siting LiChaojun Hu

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Datasets Mentioned

BETA
15

Software Mentioned

Protein ANalysis THrough Evolutionary Relationships ( PANTHER )
R scripts
The Database for Annotation , Visualization and Integrated Dis...
STRING
MySQL
PANTHER
joomla
PMD
GenePix
Search Tool for the Retrieval of Interacting Genes Proteins ( ...

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