Program report: GENECOUNTING support programs.

Annals of Human Genetics
D CurtisP C Sham

Abstract

We describe a suite of programs which enhance the usability of GENECOUNTING, a program for estimating haplotype frequencies in unrelated subjects. The programs, called RUNGC, SCANASSOC, COMPGR, SCANGROUP and LDPAIRS, carry out likelihood ratio tests and permutation tests to detect differences in haplotype frequencies between cases and controls,or between predefined groups, and output likely haplotype assignments and tables of linkage disequilibrium statistics between all pairs of markers in a dataset.

References

May 9, 2000·Human Heredity·J H ZhaoP C Sham
Mar 20, 2002·Human Heredity·Jing Hua Zhao, Pak Chnng Sham
Jul 12, 2002·American Journal of Human Genetics·B V NorthP C Sham
Dec 20, 2002·Bioinformatics·Jing Hua ZhaoPak Chung Sham
Feb 25, 2003·American Journal of Human Genetics·B V NorthP C Sham
Mar 1, 1957·Annals of Human Genetics·C A SMITH
Oct 24, 2003·American Journal of Human Genetics·Matthew Stephens, Peter Donnelly

❮ Previous
Next ❯

Citations

Apr 3, 2008·Journal of Periodontology·Luigi NibaliFrancesco D'Aiuto
Jan 1, 2008·Advances and Applications in Bioinformatics and Chemistry : AABC·David CurtisJo Knight
Feb 14, 2008·Journal of Clinical Periodontology·Luigi NibaliPeter M Brett
Apr 9, 2008·Genetic Epidemiology·Jo KnightPak C Sham
Feb 9, 2011·American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics·Ana C Parente PereiraHugh M D Gurling
Jan 11, 2012·American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics·Radhika KandaswamyHugh Gurling
Jul 27, 2010·Journal of Clinical Periodontology·Fernando Franch-ChillidaPeter Brett
Mar 16, 2013·Journal of Psychiatric Research·Fanglin GuanShengbin Li
Jun 12, 2008·European Journal of Human Genetics : EJHG·Rachel H FlomenAndrew J Makoff
Jan 10, 2008·European Addiction Research·P A SáizJ Bobes
Mar 15, 2006·European Psychiatry : the Journal of the Association of European Psychiatrists·Pilar Alejandra SaizJulio Bobes
Feb 10, 2007·American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics·Sarah TosatoDavid A Collier

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.