Protein phosphatase complement in rice: genome-wide identification and transcriptional analysis under abiotic stress conditions and reproductive development.

BMC Genomics
Amarjeet SinghGirdhar K Pandey

Abstract

Protein phosphatases are the key components of a number of signaling pathways where they modulate various cellular responses. In plants, protein phosphatases constitute a large gene family and are reportedly involved in the regulation of abiotic stress responses and plant development. Recently, the whole complement of protein phosphatases has been identified in Arabidopsis genome. While PP2C class of serine/threonine phosphatases has been explored in rice, the whole complement of this gene family is yet to be reported. In silico investigation revealed the presence of 132-protein phosphatase-coding genes in rice genome. Domain analysis and phylogenetic studies of evolutionary relationship categorized these genes into PP2A, PP2C, PTP, DSP and LMWP classes. PP2C class represents a major proportion of this gene family with 90 members. Chromosomal localization revealed their distribution on all the 12 chromosomes, with 42 genes being present on segmentally duplicated regions and 10 genes on tandemly duplicated regions of chromosomes. The expression profiles of 128 genes under salinity, cold and drought stress conditions, 11 reproductive developmental (panicle and seed) stages along with three stages of vegetative development were an...Continue Reading

References

Jan 1, 1993·Plant Molecular Biology·R D Smith, J C Walker
Aug 1, 1996·Computer Applications in the Biosciences : CABIOS·R D Page
Nov 1, 1996·Trends in Biochemical Sciences·D Barford
Nov 1, 1996·Trends in Biochemical Sciences·E B Fauman, M A Saper
Feb 21, 1998·Nucleic Acids Research·J M CherryD Botstein
Jan 7, 1998·The Plant Journal : for Cell and Molecular Biology·H KnightM R Knight
Jul 1, 1998·Annual Review of Biophysics and Biomolecular Structure·D BarfordM P Egloff
Jan 6, 1999·Proceedings of the National Academy of Sciences of the United States of America·M LuoA M Chaudhury
Feb 26, 1999·The Plant Journal : for Cell and Molecular Biology·R GuptaS Luan
Mar 11, 1999·Journal of Receptor and Signal Transduction Research·M ItenE Grill
Mar 17, 1999·The Journal of Clinical Investigation·R V Schillace, J D Scott
Jul 8, 1999·Journal of Cellular Physiology·J Chernoff
Jul 23, 1999·Mechanisms of Development·J den Hertog
Aug 5, 1999·Cellular Signalling·A V Andreeva, M A Kutuzov
Jun 6, 2000·Current Opinion in Plant Biology·K Shinozaki, K Yamaguchi-Shinozaki
Aug 1, 2000·Trends in Biochemical Sciences·C W Smith, J Valcárcel
Nov 10, 2000·Science·M Lynch, J S Conery
May 30, 2001·Trends in Plant Science·H Knight, M R Knight
Feb 22, 2002·European Journal of Biochemistry·Alan ChengMichel L Tremblay
Jun 5, 2002·The Plant Cell·Dale SandersJeffrey F Harper
Aug 3, 2002·Plant & Cell Physiology·Randy DinkinsGlenn B Collins
Aug 27, 2002·Proceedings of the National Academy of Sciences of the United States of America·Sheng Luan
Nov 5, 2002·Nature Reviews. Genetics·Victoria E Prince, F Bryan Pickett
Sep 23, 2003·Proceedings of the National Academy of Sciences of the United States of America·Gui-In LeeSteven R Van Doren
Sep 25, 2003·Annual Review of Plant Biology·Sheng Luan
Dec 9, 2003·Trends in Biochemical Sciences·Luca D D'Andrea, Lynne Regan
Mar 12, 2004·Annual Review of Plant Physiology and Plant Molecular Biology·Michael F. Thomashow
Jun 1, 1996·Annual Review of Plant Physiology and Plant Molecular Biology·Robert D. Smith, John C. Walker
Nov 9, 2004·Bioinformatics·Johannes Söding
Mar 22, 2006·Proceedings of the National Academy of Sciences of the United States of America·Saverio GentileDavid L Armstrong
Apr 25, 2006·Proceedings of the National Academy of Sciences of the United States of America·Bing-Bing Wang, Volker Brendel
Aug 30, 2006·Proceedings of the National Academy of Sciences of the United States of America·Atsushi TakemiyaKen-Ichiro Shimazaki
Dec 19, 2006·Plant Physiology·Christopher DardickPamela Ronald

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Citations

Mar 29, 2013·Plant Cell Reports·Kazuo Nakashima, Kazuko Yamaguchi-Shinozaki
Jul 31, 2013·Omics : a Journal of Integrative Biology·Manali MishraGirdhar K Pandey
Jul 9, 2013·Protoplasma·Alejandro Tovar-MendezDouglas D Randall
Jan 9, 2014·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Manisha SharmaGirdhar K Pandey
Feb 19, 2014·Trends in Plant Science·Dylan M SilverGreg B G Moorhead
Sep 19, 2015·Critical Reviews in Biotechnology·Amarjeet SinghGirdhar K Pandey
Apr 25, 2012·Plant Science : an International Journal of Experimental Plant Biology·Yuge LiJinfa Wang
Feb 15, 2011·Phytochemistry·Sharon C Mithoe, Frank L H Menke
Jun 26, 2012·The FEBS Journal·Stefan FuchsAlois Schweighofer
Sep 17, 2013·Physiologia Plantarum·Ngoc-Nam TrinhHao-Jen Huang
Sep 19, 2017·PloS One·Pawan Kumar JayaswalNagendra Kumar Singh
Jun 17, 2020·The FEBS Journal·Malathi BheriGirdhar K Pandey
Mar 28, 2017·Frontiers in Plant Science·Xibing CaoWenshan Liu

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Datasets Mentioned

BETA
GPL2025
GSE6893
GSE6901

Methods Mentioned

BETA
environmental stresses
Chip
chips
PCR
GTPase

Software Mentioned

TREEVIEW
MegAlign
MPSS
SMART ( Simple Modular Architecture Research Tool )
SMART
BLAST
ClustalX
Array Assist
InterPro
HMMER

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