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Pybedtools: a flexible Python library for manipulating genomic datasets and annotations

Bioinformatics

Sep 29, 2011

Ryan K DaleAaron R Quinlan

Abstract

pybedtools is a flexible Python software library for manipulating and exploring genomic datasets in many common formats. It provides an intuitive Python interface that extends upon the popular BEDTools genome arithmetic tools. The library is well documented and efficient, and allows res...read more

Mentioned in this Paper

Genome
Bio-Informatics
Computer Programs and Programming
Genomics
Molecular Sequence Annotation
Manipulating Function
Computational Molecular Biology
15
245
Paper Details
References
  • References8
  • Citations70
1
  • References8
  • Citations70
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Pybedtools: a flexible Python library for manipulating genomic datasets and annotations

Bioinformatics

Sep 29, 2011

Ryan K DaleAaron R Quinlan

PMID: 21949271

DOI: 10.1093/bioinformatics/btr539

Abstract

pybedtools is a flexible Python software library for manipulating and exploring genomic datasets in many common formats. It provides an intuitive Python interface that extends upon the popular BEDTools genome arithmetic tools. The library is well documented and efficient, and allows res...read more

Mentioned in this Paper

Genome
Bio-Informatics
Computer Programs and Programming
Genomics
Molecular Sequence Annotation
Manipulating Function
Computational Molecular Biology
15
245

Feeds With Similar Papers

Structural Biology: Biophysics

Structural Biology: Biophysics describes the study of structural biology using various biophysical techiniques such as imaging, computational modeling, etc. Discover the latest research on structrual biology here.

Related Papers

Bioinformatics

BEDTools: a flexible suite of utilities for comparing genomic features

BioinformaticsJanuary 30, 2010
Aaron R Quinlan, Ira M Hall
Bioinformatics

BEDOPS: high-performance genomic feature operations

BioinformaticsMay 12, 2012
Shane NephJohn A Stamatoyannopoulos
Paper Details
References
  • References8
  • Citations70
1
  • References8
  • Citations70
12345...

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