PyMVPA: A python toolbox for multivariate pattern analysis of fMRI data.

Michael HankeStefan Pollmann


Decoding patterns of neural activity onto cognitive states is one of the central goals of functional brain imaging. Standard univariate fMRI analysis methods, which correlate cognitive and perceptual function with the blood oxygenation-level dependent (BOLD) signal, have proven successful in identifying anatomical regions based on signal increases during cognitive and perceptual tasks. Recently, researchers have begun to explore new multivariate techniques that have proven to be more flexible, more reliable, and more sensitive than standard univariate analysis. Drawing on the field of statistical learning theory, these new classifier-based analysis techniques possess explanatory power that could provide new insights into the functional properties of the brain. However, unlike the wealth of software packages for univariate analyses, there are few packages that facilitate multivariate pattern classification analyses of fMRI data. Here we introduce a Python-based, cross-platform, and open-source software toolbox, called PyMVPA, for the application of classifier-based analysis techniques to fMRI datasets. PyMVPA makes use of Python's ability to access libraries written in a large variety of programming languages and computing envir...Continue Reading


Dec 18, 2001·Human Brain Mapping·Thomas E Nichols, Andrew P Holmes
May 11, 2002·Cerebral Cortex·Wim VanduffelGuy A Orban
Apr 15, 2005·Journal of Cognitive Neuroscience·Alice J O'TooleJames V Haxby
Apr 27, 2005·Nature Neuroscience·John-Dylan Haynes, Geraint Rees
Apr 27, 2005·Nature Neuroscience·Yukiyasu Kamitani, Frank Tong
May 24, 2005·NeuroImage·Stephen LaConteXiaoping Hu
Jun 10, 2005·IEEE Transactions on Pattern Analysis and Machine Intelligence·Balaji KrishnapuramAlexander J Hartemink
Mar 16, 2006·Proceedings of the National Academy of Sciences of the United States of America·Nikolaus KriegeskortePeter Bandettini
Mar 28, 2006·IEEE Transactions on Neural Systems and Rehabilitation Engineering : a Publication of the IEEE Engineering in Medicine and Biology Society·Manoj ThulasidasJiankang Wu
Apr 22, 2006·Cerebral Cortex·Luiz Pessoa, Srikanth Padmala
Jun 23, 2006·Nature Reviews. Neuroscience·John-Dylan Haynes, Geraint Rees
Aug 11, 2006·Trends in Cognitive Sciences·Kenneth A NormanJames V Haxby
Feb 13, 2007·Current Biology : CB·John-Dylan HaynesRichard E Passingham
Mar 16, 2007·IEEE Transactions on Bio-medical Engineering·Marcos Perreau GuimaraesPatrick Suppes
Dec 14, 2007·Proceedings of the National Academy of Sciences of the United States of America·Nikolaus KriegeskorteRainer Goebel

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