QTL Mapping and Data Mining to Identify Genes Associated With the Sinorhizobium fredii HH103 T3SS Effector NopD in Soybean

Frontiers in Plant Science
Jinhui WangDawei Xin

Abstract

In some legume-rhizobium symbioses, host specificity is influenced by rhizobial type III effectors-nodulation outer proteins (Nops). However, the genes encoding host proteins that interact with Nops remain unknown. In this study, we aimed to identify candidate soybean genes associated with NopD, one of the type III effectors of Sinorhizobium fredii HH103. The results showed that the expression pattern of NopD was analyzed in rhizobia induced by genistein. We also found NopD can be induced by TtsI, and NopD as a toxic effector can induce tobacco leaf death. In 10 soybean germplasms, NopD played a positively effect on nodule number (NN) and nodule dry weight (NDW) in nine germplasms, but not in Kenjian28. Significant phenotype of NN and NDW were identified between Dongnong594 and Charleston, Suinong14 and ZYD00006, respectively. To map the quantitative trait locus (QTL) associated with NopD, a recombinant inbred line (RIL) population derived from the cross between Dongnong594 and Charleston, and chromosome segment substitution lines (CSSLs) derived from Suinong14 and ZYD00006 were used. Two overlapping conditional QTL associated with NopD on chromosome 19 were identified. Two candidate genes were identified in the confident regio...Continue Reading

References

Jan 1, 1991·Annual Review of Microbiology·G Caetano-Anollés, P M Gresshoff
Aug 1, 1996·The Plant Journal : for Cell and Molecular Biology·P TorneroP Vera
Feb 17, 1999·Proceedings of the National Academy of Sciences of the United States of America·P KapranovK Szczyglowski
Oct 12, 1999·Molecular Plant-microbe Interactions : MPMI·M A SchoenbeckC P Vance
Dec 31, 2002·Proceedings of the National Academy of Sciences of the United States of America·Haejeong MoonDae-Jin Yun
Feb 25, 2003·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Takakazu KanekoSatoshi Tabata
Mar 21, 2003·The Journal of Biological Chemistry·Irute MeskieneHeribert Hirt
Sep 16, 2003·Molecular Plant-microbe Interactions : MPMI·Corinne MarieWilliam J Broughton
Nov 18, 2003·Molecular Microbiology·Andrew HotsonMary Beth Mudgett
Mar 15, 2006·Current Opinion in Microbiology·Daniela Büttner, Ulla Bonas
Jul 27, 2006·Journal of Experimental Botany·Mercedes Fernandez-PascualMaria Pilar Golvano
Jun 6, 2008·Microbiology·Francisco Javier López-BaenaFrancisco Javier Ollero
Jan 8, 2009·Proceedings of the National Academy of Sciences of the United States of America·Guixia XuHongzhi Kong
Dec 5, 2009·Molecular Plant-microbe Interactions : MPMI·Mandy WenzelSusanne Zehner
Apr 13, 2010·Applied and Environmental Microbiology·Lisa M SchechterHari B Krishnan
Oct 13, 2010·Proceedings of the National Academy of Sciences of the United States of America·Shengming YangHongyan Zhu
Mar 1, 2012·Journal of Bacteriology·Stefan WeidnerMichael Göttfert
Sep 28, 2012·Molecular Plant-microbe Interactions : MPMI·Brendan K RielyDouglas R Cook
Oct 2, 2013·Proceedings of the National Academy of Sciences of the United States of America·Shin OkazakiKazuhiko Saeki
Apr 12, 2014·Frontiers in Plant Science·Anastasia P Tampakaki
Feb 13, 2015·Molecular Plant-microbe Interactions : MPMI·José-María VinardellStefan Weidner
Mar 17, 2015·Molecular Plant-microbe Interactions : MPMI·Irene Jiménez-GuerreroFrancisco Javier López-Baena
Jul 19, 2015·Applied and Environmental Microbiology·Omar M FaruqueShin Okazaki
Sep 6, 2015·The Biochemical Journal·Christian Staehelin, Hari B Krishnan
Nov 17, 2015·PloS One·Irene Jiménez-GuerreroFrancisco Javier López-Baena
May 24, 2016·International Journal of Molecular Sciences·Francisco J López-BaenaJosé M Vinardell
Jun 18, 2017·Current Opinion in Plant Biology·Hiroki Miwa, Shin Okazaki
Oct 5, 2018·Frontiers in Plant Science·Hongwei JiangQingshan Chen

❮ Previous
Next ❯

Citations

Jun 29, 2021·Frontiers in Microbiology·Ravinder K GoyalMaria Augusta Schmidt

❮ Previous
Next ❯

Datasets Mentioned

BETA
CEO91485.1

Methods Mentioned

BETA
sumoylation
electrophoresis
transgenic

Software Mentioned

WinQTL Cartographer
MEGA6

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.