Quantitative and qualitative phenotyping of disease resistance of crops by hyperspectral sensors: seamless interlocking of phytopathology, sensors, and machine learning is needed!

Current Opinion in Plant Biology
Anne-Katrin MahleinKristian Kersting

Abstract

Determination and characterization of resistance reactions of crops against fungal pathogens are essential to select resistant genotypes. In plant breeding, phenotyping of genotypes is realized by time consuming and expensive visual plant ratings. During resistance reactions and during pathogenesis plants initiate different structural and biochemical defence mechanisms, which partly affect the optical properties of plant organs. Recently, intensive research has been conducted to develop innovative optical methods for an assessment of compatible and incompatible plant pathogen interaction. These approaches, combining classical phytopathology or microbiology with technology driven methods - such as sensors, robotics, machine learning, and artificial intelligence - are summarized by the term digital phenotyping. In contrast to common visual rating, detection and assessment methods, optical sensors in combination with advanced data analysis methods are able to retrieve pathogen induced changes in the physiology of susceptible or resistant plants non-invasively and objectively. Phenotyping disease resistance aims different tasks. In an early breeding step, a qualitative assessment and characterization of specific resistance action i...Continue Reading

References

Jul 19, 2001·Nature·J L Dangl, J D Jones
Jul 31, 2002·Annual Review of Phytopathology·Bruce A McDonald, Celeste Linde
Feb 9, 2006·Cell Death and Differentiation·J B Morel, J L Dangl
Mar 14, 2007·Annual Review of Phytopathology·Ralph Hückelhoven
Feb 13, 2010·Science·Mark Tester, Peter Langridge
Aug 7, 2010·Annual Review of Phytopathology·David B CollingeMichael F Lyngkjaer
Nov 15, 2011·Trends in Plant Science·Robert T Furbank, Mark Tester
Jan 20, 2012·Current Opinion in Biotechnology·Fabio FioraniUlrich Schurr
Apr 14, 2012·Nature·Matthew C FisherSarah J Gurr
Mar 5, 2013·Annual Review of Plant Biology·Fabio Fiorani, Ulrich Schurr
Oct 22, 2013·Trends in Plant Science·José Luis Araus, Jill E Cairns
Jan 15, 2015·Nature Reviews. Genetics·Marylyn D RitchieDokyoon Kim
Mar 4, 2015·Current Opinion in Plant Biology·Noah FahlgrenIvan Baxter
Mar 15, 2015·Plant Methods·Achim WalterAndreas Hund
Dec 15, 2015·Trends in Plant Science·Arti SinghSoumik Sarkar
Aug 6, 2016·Annual Review of Phytopathology·Jesse Poland, Jessica Rutkoski
Aug 28, 2016·Journal of Experimental Botany·Erich-Christian OerkeReinhard Toepfer
Sep 13, 2016·Phytopathology·Ivan SimkoXavier R R Sirault
Mar 5, 2017·Trends in Plant Science·Laetitia WillocquetJonathan Yuen
Jul 1, 2017·Phytopathology·Matheus Thomas KuskaAnne-Katrin Mahlein
Jul 25, 2017·Current Opinion in Plant Biology·Nadia ShakoorTodd C Mockler
Mar 21, 2018·Trends in Plant Science·José Luis ArausJill E Cairns
Jul 6, 2018·Annual Review of Phytopathology·Thorsten LangnerKhaoula Belhaj
Aug 29, 2018·Annual Review of Phytopathology·A-K MahleinA Walter
Sep 4, 2018·Frontiers in Plant Science·Kang YuAndreas Hund
Apr 21, 2019·Plant Science : an International Journal of Experimental Plant Biology·G J RebetzkeD J Smith
Feb 1, 2016·Functional Plant Biology : FPB·Marlene LeuckerErich-Christian Oerke
Aug 1, 2017·Current Opinion in Systems Biology·Frederik CoppensStijn Dhondt

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Citations

Sep 23, 2020·PloS One·Sharifa G CrandallDenis S Willett
Sep 22, 2020·Computational Intelligence and Neuroscience·Yanyi LiMingxiu Tang
Feb 2, 2021·Frontiers in Bioengineering and Biotechnology·Daoliang LiAkhter Muhammad
Mar 2, 2021·Frontiers in Plant Science·Chunqiu ZhangRebecca Grumet
Jun 3, 2021·International Journal of Molecular Sciences·Antonia MoresDaniela Marone
Jun 10, 2021·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Junrey AmasJacqueline Batley
Feb 16, 2021·Phytopathology·David BohnenkampAnne-Katrin Mahlein

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