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Rapid Core-Genome Alignment and Visualization for Thousands of Intraspecific Microbial Genomes

bioRxiv

Jul 22, 2014

Todd J. TreangenAdam M. Phillippy

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Abstract

Though many microbial species or clades now have hundreds of sequenced genomes, existing whole-genome alignment methods do not efficiently handle comparisons on this scale. Here we present the Harvest suite of core-genome alignment and visualization tools for quickly analyzing thousands...read more

Mentioned in this Paper

Genome, Microbial
Species
Simulation
Detection
Whole Genome Sequencing
Genome
Sequence Alignment
HAL-2 protein, C elegans
Trees (plant)
Recombination, Genetic
69
42
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  • Rapid Core-Genome Alignment and Visualization for Thousands of Intraspecific Microbial Genomes

    bioRxiv

    Jul 22, 2014

    Todd J. TreangenAdam M. Phillippy

    PMID: 990007351

    DOI: 10.1101/007351

    Abstract

    Though many microbial species or clades now have hundreds of sequenced genomes, existing whole-genome alignment methods do not efficiently handle comparisons on this scale. Here we present the Harvest suite of core-genome alignment and visualization tools for quickly analyzing thousands...read more

    Mentioned in this Paper

    Genome, Microbial
    Species
    Simulation
    Detection
    Whole Genome Sequencing
    69
    42

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