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Rapid Core-Genome Alignment and Visualization for Thousands of Microbial Genomes

bioRxiv

Jul 22, 2014

Todd J TreangenAdam M Phillippy

Abstract

Though many microbial species or clades now have hundreds of sequenced genomes, existing whole-genome alignment methods do not efficiently handle comparisons on this scale. Here we present the Harvest suite of core-genome alignment and visualization tools for quickly analyzing thousands...read more

Mentioned in this Paper

Detection
Species
Recombination, Genetic
Trees (plant)
HAL-2 protein, C elegans
Whole Genome Sequencing
Genome, Microbial
Microbial
Simulation
Sequence Alignment
69
42
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Rapid Core-Genome Alignment and Visualization for Thousands of Microbial Genomes

bioRxiv

Jul 22, 2014

Todd J TreangenAdam M Phillippy

PMID: 990007351

DOI: 10.1101/007351

Abstract

Though many microbial species or clades now have hundreds of sequenced genomes, existing whole-genome alignment methods do not efficiently handle comparisons on this scale. Here we present the Harvest suite of core-genome alignment and visualization tools for quickly analyzing thousands...read more

Mentioned in this Paper

Detection
Species
Recombination, Genetic
Trees (plant)
HAL-2 protein, C elegans
Whole Genome Sequencing
Genome, Microbial
Microbial
Simulation
Sequence Alignment
69
42

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