journal cover

Rapid de novo assembly of the European eel genome from nanopore sequencing reads

bioRxiv

Jan 20, 2017

Hans J JansenChristiaan V Henkel

Abstract

We have sequenced the genome of the endangered European eel using the MinION by Oxford Nanopore, and assembled these data using a novel algorithm specifically designed for large eukaryotic genomes. For this 860 Mbp genome, the entire computational process takes two days on a single CPU....read more

Mentioned in this Paper

Genome
Genome Assembly Sequence
Nucleic Acid Sequencing
Genomics
Sequencing
Structure
Anguilla anguilla
Molecular Assembly/Self Assembly
114
2
33
Paper Details
References
  • References
  • Citations
  • finger pointing at paper

    References currently unavailable

    We're still populating references for this paper, please check back later.
  • References
  • Citations
  • quote and clock

    No citations available

    This paper may not have been cited yet.

Similar Papers Found In These Feeds

BioRxiv Preprints

BioRxiv is the preprint server for biology, operated by Cold Spring Harbor Laboratory. Here are the latest biology preprint articles from bioRxiv.

Related Papers

Scientific Reports

Rapid de novo assembly of the European eel genome from nanopore sequencing reads

Scientific ReportsAugust 5, 2017
Hans J JansenChristiaan V Henkel
Genome Research

Assembly of large genomes using second-generation sequencing

Genome ResearchMay 29, 2010
Michael C SchatzSteven L Salzberg
© 2020 Meta ULC. All rights reserved

Rapid de novo assembly of the European eel genome from nanopore sequencing reads

bioRxiv

Jan 20, 2017

Hans J JansenChristiaan V Henkel

PMID: 990101907

DOI: 10.1101/101907

Abstract

We have sequenced the genome of the endangered European eel using the MinION by Oxford Nanopore, and assembled these data using a novel algorithm specifically designed for large eukaryotic genomes. For this 860 Mbp genome, the entire computational process takes two days on a single CPU....read more

Mentioned in this Paper

Genome
Genome Assembly Sequence
Nucleic Acid Sequencing
Genomics
Sequencing
Structure
Anguilla anguilla
Molecular Assembly/Self Assembly
114
2
33

Similar Papers Found In These Feeds

BioRxiv Preprints

BioRxiv is the preprint server for biology, operated by Cold Spring Harbor Laboratory. Here are the latest biology preprint articles from bioRxiv.

Related Papers

Scientific Reports

Rapid de novo assembly of the European eel genome from nanopore sequencing reads

Scientific ReportsAugust 5, 2017
Hans J JansenChristiaan V Henkel
Genome Research

Assembly of large genomes using second-generation sequencing

Genome ResearchMay 29, 2010
Michael C SchatzSteven L Salzberg
Paper Details
References
  • References
  • Citations
  • finger pointing at paper

    References currently unavailable

    We're still populating references for this paper, please check back later.
  • References
  • Citations
  • quote and clock

    No citations available

    This paper may not have been cited yet.
/papers/rapid-de-novo-assembly-of-the-european-eel-genome/990101907