Rapid in vitro detection of CTX-M groups 1, 2, 8, 9 resistance genes by LAMP assays

PloS One
Odile Lalainasoa RivoarilalaJean Marc Collard

Abstract

The prevalence of bacteria producing CTX-M Extended-Spectrum β-lactamases (ESBLs) has increased around the world and some of them became a major cause of infections such as bloodstream or urinary tract infections (UTI). We developed a loop-mediated isothermal amplification (LAMP) assay for a simple, rapid and sensitive detection of the four most common CTX-M groups, namely CTX-M groups 1, 2, 8 and 9. LAMP primers targeting the four ESBLs CTX-M groups were designed using the Primer Explorer V4 software. The detection limit of the method was tested by serial dilution of reference DNAs. The primer specificity of the LAMP reaction was tested on DNA extracted from six strains producing various group of CTX-M and validated using DNA extracted from CTX-M-resistant clinical isolates (isolated from pus, urine, or blood). Results were compared with those of conventional PCR. We were able to detect down to 0.1 pg/ul of DNA using the newly developed LAMP assays whereas the minimal amount detectable for conventional PCR was 50 to 100pg/ul, indicating that the LAMP assay was found to have a detection limit at least 500 to 1000 times lower than the PCR. Additionally, representative genes from the CTX-M groups 1, 2, 8 and 9 were amplified usin...Continue Reading

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Datasets Mentioned

BETA
AF255298.1
AY005110.1
AF305837.1
AY044436.1
AY080894.1
AF488377.1
for
AB770487.1
AJ005045.1
AJ416344.1

Methods Mentioned

BETA
PCR
electrophoresis

Software Mentioned

BLAST
LAMP
BioEdit
Primer Explorer

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