Jun 9, 2020Paper

Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia

BioRxiv : the Preprint Server for Biology
Jessica E ManningErik A Karlsson

Abstract

Rapid production and publication of pathogen genome sequences during emerging disease outbreaks provide crucial public health information. In resource-limited settings, especially near an outbreak epicenter, conventional deep sequencing or bioinformatics are often challenging. Here we successfully used metagenomic next generation sequencing on an iSeq100 Illumina platform paired with an open-source bioinformatics pipeline to quickly characterize Cambodia's first case of COVID-2019.

Citations

Jun 13, 2020·Microbiology Resource Announcements·Senjuti SahaSamir K Saha
Sep 15, 2020·Briefings in Bioinformatics·Wenzhong Yang, Guangxu Jin
Feb 9, 2021·Chemical Engineering Journal·Shariq SulemanTejraj M Aminabhavi
Jul 3, 2021·International Journal of Molecular Sciences·Tapan BehlSimona Gabriela Bungau

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