Rapid reorganization of the transcriptional regulatory network after genome duplication in yeast.

Proceedings. Biological Sciences
Gavin C Conant

Abstract

I study the reorganization of the yeast transcriptional regulatory network after whole-genome duplication (WGD). Individual transcription factors (TFs) were computationally removed from the regulatory network, and the resulting networks were analysed. TF gene pairs that survive in duplicate from WGD show detectable redundancy as a result of that duplication. However, in most other respects, these duplicated TFs are indistinguishable from other TFs in the genome, suggesting that the duplicate TFs produced by WGD were rapidly diverted to distinct functional roles in the regulatory network. Separately, I find that genes targeted by many TFs appear to be preferentially retained in duplicate after WGD, an effect I attribute to selection to maintain dosage balance in the regulatory network after WGD.

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Citations

Oct 18, 2011·BMC Evolutionary Biology·Luigi Grassi, Anna Tramontano
Jan 22, 2011·PLoS Computational Biology·Chong ShouMark B Gerstein
Nov 10, 2012·Journal of Molecular Evolution·Jing HeYaping Zhang
Aug 18, 2012·International Journal of Evolutionary Biology·Lukasz Huminiecki, Gavin C Conant
Oct 6, 2018·The New Phytologist·Guanjing Hu, Jonathan F Wendel
Jan 30, 2019·Genes·Kristine SalminaJekaterina Erenpreisa
Jan 8, 2020·International Journal of Molecular Sciences·Jekaterina Erenpreisa, Alessandro Giuliani

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