RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Bioinformatics
Alexandros Stamatakis

Abstract

RAxML-VI-HPC (randomized axelerated maximum likelihood for high performance computing) is a sequential and parallel program for inference of large phylogenies with maximum likelihood (ML). Low-level technical optimizations, a modification of the search algorithm, and the use of the GTR+CAT approximation as replacement for GTR+Gamma yield a program that is between 2.7 and 52 times faster than the previous version of RAxML. A large-scale performance comparison with GARLI, PHYML, IQPNNI and MrBayes on real data containing 1000 up to 6722 taxa shows that RAxML requires at least 5.6 times less main memory and yields better trees in similar times than the best competing program (GARLI) on datasets up to 2500 taxa. On datasets > or =4000 taxa it also runs 2-3 times faster than GARLI. RAxML has been parallelized with MPI to conduct parallel multiple bootstraps and inferences on distinct starting trees. The program has been used to compute ML trees on two of the largest alignments to date containing 25,057 (1463 bp) and 2182 (51,089 bp) taxa, respectively. icwww.epfl.ch/~stamatak

References

Aug 13, 2003·Bioinformatics·Fredrik Ronquist, John P Huelsenbeck
Oct 8, 2003·Systematic Biology·Stéphane Guindon, Olivier Gascuel
Jun 18, 2005·Bioinformatics·Benny Chor, Tamir Tuller
Jul 22, 2005·Proceedings of the National Academy of Sciences of the United States of America·Ruth E LeyJeffrey I Gordon
Jul 28, 2005·Bioinformatics·Bui Quang MinhHeiko A Schmidt
Oct 21, 2005·Current Opinion in Microbiology·Charles E RobertsonNorman R Pace
May 5, 2006·Applied and Environmental Microbiology·Ruth E LeyNorman R Pace

Citations

Oct 19, 2010·Cellular and Molecular Life Sciences : CMLS·Chunju AnKristin Michel
Feb 22, 2008·Die Naturwissenschaften·Georg Fuellen
Oct 4, 2011·Die Naturwissenschaften·Matthew David MacManes
Aug 12, 2009·Journal of Molecular Evolution·Guifré TorruellaIñaki Ruiz-Trillo
Jun 1, 2010·Journal of Molecular Evolution·Maria S ConejoBrian G Miller
Sep 29, 2011·Journal of Molecular Evolution·Bin ShenShuyi Zhang
Mar 1, 2012·Journal of Molecular Evolution·Juliette ArabiAlexandre Hassanin
Jan 29, 2013·Journal of Molecular Evolution·Stephanie J Spielman, Claus O Wilke
Feb 28, 2013·Journal of Molecular Evolution·Rachael A Bay, Joseph P Bielawski
Mar 19, 2013·Journal of Molecular Evolution·James Starrett, Cheryl Y Hayashi
Feb 18, 2009·Microbial Ecology·Amanda J Redford, Noah Fierer
Oct 13, 2011·Microbial Ecology·Mincheol KimJonathan Adams
Mar 27, 2013·Microbial Ecology·Lucía PitaPatrick M Erwin
May 18, 2013·Microbial Ecology·Mincheol KimJonathan Adams
Mar 3, 2010·Immunogenetics·Qing ZhangAdam Godzik
Dec 29, 2010·Current Microbiology·Harpreet Kaur KanwalM Sudhakara Reddy
Feb 22, 2011·Current Microbiology·Patrick H DegnanRodrigo P P Almeida
Jul 20, 2010·Journal of Comparative Physiology. B, Biochemical, Systemic, and Environmental Physiology·Samantha ScherbaumThorsten Burmester
Sep 13, 2012·Planta·Peng WangJane A Langdale
Mar 26, 2009·Development Genes and Evolution·Christoph BleidornRalph Tiedemann
Apr 24, 2013·Development Genes and Evolution·Anne WeigertChristoph Bleidorn
May 7, 2010·Mycorrhiza·Jie Wei, Reinhard Agerer
Feb 25, 2011·Archives of Virology·Andrew D W GeeringJ E Thomas
Mar 12, 2013·Archives of Virology·M Sharman, J E Thomas
Oct 16, 2012·Extremophiles : Life Under Extreme Conditions·Lukáš Falteisek, Ivan Cepička
Jan 30, 2013·Extremophiles : Life Under Extreme Conditions·Olga ZhaxybayevaR Thane Papke
Jun 1, 2010·Journal of Plant Research·Takuro NakayamaIsao Inouye
Jun 15, 2010·Journal of Industrial Microbiology & Biotechnology·Ulf GranhallSara Hallin
May 4, 2012·Antonie van Leeuwenhoek·Stefanie P GlaeserPeter Kämpfer
Jan 31, 2013·Antonie van Leeuwenhoek·Klementyna Karlińska-Batres, Gert Wörheide
Feb 9, 2013·Antonie van Leeuwenhoek·Tomas Allen Rush, M Catherine Aime
Mar 1, 2013·Antonie van Leeuwenhoek·Harald GalatisStefanie P Glaeser
Sep 10, 2013·Applied Biochemistry and Biotechnology·D Wade AbbottAlisdair B Boraston
Dec 19, 2012·Theory in Biosciences = Theorie in Den Biowissenschaften·Natascha HillStefanie Hartmann
Sep 10, 2013·Fungal Biology·Christiane BaschienLudmila Marvanová
Mar 6, 2013·Insect Biochemistry and Molecular Biology·Raphael RytzRichard Benton
Mar 2, 2013·Bulletin of Entomological Research·Jean-François GermainAstrid Cruaud
Dec 2, 2010·Parasitology·Joana C SilvaAustin L Hughes
Mar 13, 2012·Parasitology·Nayara O BeloRobert E Ricklefs
May 1, 2008·Neuron Glia Biology·Robert M GouldAlexander Gow
Sep 25, 2012·Biochemistry·Kira P SchultheissWebb Miller
Sep 13, 2013·Environmental Science & Technology·Cynthia C GilmourDwayne A Elias
Jun 5, 2010·Journal of Natural Products·Moriah SandyAlison Butler
Feb 27, 2009·The ISME Journal·Amy ApprillMichael S Rappé
Jul 16, 2010·The ISME Journal·Linda A Amaral-ZettlerRicardo Amils
Jul 9, 2010·The ISME Journal·Melissa Beth DuhaimeFrank Oliver Glöckner
Aug 5, 2011·The ISME Journal·Yu MatsuuraTakema Fukatsu
Sep 23, 2011·The ISME Journal·Manuel Martinez-GarciaRamunas Stepanauskas
Dec 3, 2011·The ISME Journal·Joan M BernhardDavid J Beaudoin
Dec 16, 2011·The ISME Journal·Mads AlbertsenKåre Lehmann Nielsen
Dec 16, 2011·The ISME Journal·Chris L DupontJ Craig Venter
Jul 14, 2012·The ISME Journal·Michael D J LynchJosh D Neufeld
Jul 20, 2012·The ISME Journal·Javier del CampoRamon Massana
Jul 19, 2013·The ISME Journal·Cédric BerneyDavid Bass
Mar 8, 2013·The ISME Journal·Laurent PhilippotPierre-Alain Maron
Apr 20, 2013·The ISME Journal·Raquel Rodríguez-MartínezRamon Massana
Jun 23, 2012·Nature·Catherine E WagnerOle Seehausen
Jul 26, 2013·Nature·Rajinder SinghRavigadevi Sambanthamurthi
Sep 6, 2013·Nature·Joe ParkerStephen J Rossiter
Jan 29, 2013·Nature Biotechnology·Rajeev K VarshneyDouglas R Cook
Mar 17, 2011·Nature Communications·H JanovjakE Y Isacoff
Nov 17, 2011·Nature Communications·Katsuhisa OzakiHiroshi Yoshikawa
Sep 20, 2012·Nature Communications·Nicholas R CasewellWolfgang Wüster
Nov 15, 2012·Nature Communications·Mayako KutsukakeTakema Fukatsu
May 23, 2013·Nature Communications·Robert LanfearAndrew E Allen
Jun 19, 2013·Nature Communications·Debashish BhattacharyaHwan Su Yoon
Aug 15, 2013·Nature Communications·Nicola SegataCurtis Huttenhower
Aug 15, 2013·Nature Communications·Hiroshi SugaIñaki Ruiz-Trillo
Sep 18, 2013·Nature Communications·Jon Jerlström-HultqvistStaffan G Svärd
Nov 10, 2013·Nature Communications·Kenneth M HalanychCraig R Smith
Jul 31, 2013·Nature Methods·Daniel R MendePeer Bork
Oct 22, 2013·Nature Methods·Shinichi SunagawaPeer Bork
Dec 7, 2010·Nature Reviews. Microbiology·Ricardo Cavicchioli
Jan 10, 2008·Proceedings of the National Academy of Sciences of the United States of America·Joel B DacksMark C Field
Sep 4, 2008·Proceedings of the National Academy of Sciences of the United States of America·John HarshmanTamaki Yuri
Oct 15, 2008·Proceedings of the National Academy of Sciences of the United States of America·Erica Bree RosenblumMichael B Eisen
Sep 5, 2008·Proceedings of the National Academy of Sciences of the United States of America·Elijah RobertsZaida Luthey-Schulten
Sep 24, 2008·Proceedings of the National Academy of Sciences of the United States of America·Nikos PoulakakisAdalgisa Caccone
Dec 17, 2008·Proceedings of the National Academy of Sciences of the United States of America·Robert J GiffordRobert W Shafer
Feb 25, 2009·Proceedings of the National Academy of Sciences of the United States of America·Vladimir HamplAndrew J Roger
Dec 17, 2008·Proceedings of the National Academy of Sciences of the United States of America·Cymon J CoxT Martin Embley
Jul 2, 2009·Proceedings of the National Academy of Sciences of the United States of America·Eric Schuettpelz, Kathleen M Pryer
May 20, 2009·Proceedings of the National Academy of Sciences of the United States of America·Patrick H DegnanNancy A Moran
Jul 25, 2009·Proceedings of the National Academy of Sciences of the United States of America·David L AdelsonRobert C Edgar
Jul 21, 2009·Proceedings of the National Academy of Sciences of the United States of America·Marc T J JohnsonMark D Rausher
Jul 25, 2009·Proceedings of the National Academy of Sciences of the United States of America·Adam D LeachéJimmy A McGuire
Feb 24, 2010·Proceedings of the National Academy of Sciences of the United States of America·Michael J MooreDouglas E Soltis
Dec 17, 2009·Proceedings of the National Academy of Sciences of the United States of America·Frank ScheckenbachHartmut Arndt
Feb 10, 2010·Proceedings of the National Academy of Sciences of the United States of America·Erika J Edwards, Stephen A Smith
Oct 6, 2010·Proceedings of the National Academy of Sciences of the United States of America·Mark A BeilsteinSarah Mathews
Jan 19, 2010·Proceedings of the National Academy of Sciences of the United States of America·Chris Todd HittingerAntonis Rokas
Apr 7, 2010·Proceedings of the National Academy of Sciences of the United States of America·Miao HeJulian Parkhill
May 19, 2010·Proceedings of the National Academy of Sciences of the United States of America·Jason C Slot, Antonis Rokas
Mar 23, 2010·Proceedings of the National Academy of Sciences of the United States of America·Stephen A SmithMichael J Donoghue
May 19, 2010·Proceedings of the National Academy of Sciences of the United States of America·Arnau Sebé-PedrósIñaki Ruiz-Trillo
Jan 12, 2011·Proceedings of the National Academy of Sciences of the United States of America·Sota FujiiIan D Small
Nov 10, 2010·Proceedings of the National Academy of Sciences of the United States of America·Robert LanfearLindell Bromham
Sep 30, 2010·Proceedings of the National Academy of Sciences of the United States of America·Etienne G J DanchinPierre Abad
Mar 16, 2011·Proceedings of the National Academy of Sciences of the United States of America·Brian M WiegmannDavid K Yeates
May 25, 2011·Proceedings of the National Academy of Sciences of the United States of America·Li LiSusan A Martinis
Jul 27, 2011·Proceedings of the National Academy of Sciences of the United States of America·Béatrice LecroqJan Pawlowski
Jan 26, 2011·Proceedings of the National Academy of Sciences of the United States of America·Knud A JønssonJon Fjeldså
May 4, 2011·Proceedings of the National Academy of Sciences of the United States of America·Mónica ArakakiErika J Edwards
May 11, 2011·Proceedings of the National Academy of Sciences of the United States of America·Kim RoelantsFranky Bossuyt
Aug 10, 2011·Proceedings of the National Academy of Sciences of the United States of America·Catherine BurkeTorsten Thomas
Aug 30, 2011·Proceedings of the National Academy of Sciences of the United States of America·David M DoughtyDianne K Newman
Sep 14, 2011·Proceedings of the National Academy of Sciences of the United States of America·Julien ThézéElisabeth A Herniou
Feb 15, 2012·Proceedings of the National Academy of Sciences of the United States of America·Thomas J NearChristopher D Jones
Feb 7, 2012·Proceedings of the National Academy of Sciences of the United States of America·Adrian MarchettiE Virginia Armbrust
Mar 1, 2012·Proceedings of the National Academy of Sciences of the United States of America·Ricardo AcuñaJocelyn K C Rose
Feb 23, 2012·Proceedings of the National Academy of Sciences of the United States of America·Luděk KořenýJulius Lukes
Jul 18, 2012·Proceedings of the National Academy of Sciences of the United States of America·Jean-François PombertPatrick J Keeling
Oct 10, 2012·Proceedings of the National Academy of Sciences of the United States of America·Zhenxiang XiCharles C Davis
Jan 2, 2013·Proceedings of the National Academy of Sciences of the United States of America·Ali Morton WalshDavid L Adelson
Aug 8, 2012·Proceedings of the National Academy of Sciences of the United States of America·Thomas J NearW Leo Smith
Dec 14, 2012·Proceedings of the National Academy of Sciences of the United States of America·Guy Leonard, Thomas A Richards
Aug 30, 2012·Proceedings of the National Academy of Sciences of the United States of America·Sen SongShaoyuan Wu
Nov 2, 2012·Proceedings of the National Academy of Sciences of the United States of America·Juan Carlos Villarreal, Susanne S Renner
Jul 17, 2013·Proceedings of the National Academy of Sciences of the United States of America·Thomas J NearPeter C Wainwright
Jul 17, 2013·Proceedings of the National Academy of Sciences of the United States of America·Tracy H HazenDavid A Rasko
Oct 2, 2013·Proceedings of the National Academy of Sciences of the United States of America·Kathryn E HoltStephen Baker
Jul 10, 2013·Proceedings of the National Academy of Sciences of the United States of America·So NakagawaMartha L Bulyk
Nov 28, 2013·Proceedings of the National Academy of Sciences of the United States of America·Alexander HaywardPatric Jern
Nov 15, 2011·The Journal of Biological Chemistry·Ivana L ViolaDaniel H Gonzalez
Dec 17, 2011·The Journal of Biological Chemistry·Alicia R Timme-LaragyMark E Hahn
Aug 3, 2011·Molecular & Cellular Proteomics : MCP·Janine KoepkeMichael Feldbrügge
Jan 1, 2012·African Journal of Herpetology : Journal of the Herpetological Association of Africa·Eli GreenbaumChifundera Kusamba
Oct 22, 2009·AIDS Research and Human Retroviruses·Leandro R JonesManuel Gomez-Carrillo
Oct 19, 2010·AIDS Research and Human Retroviruses·Vijay B BansodeGrace P McCormack
Apr 10, 2010·Journal of Computational Biology : a Journal of Computational Molecular Cell Biology·Nicholas D PattengaleAlexandros Stamatakis
Nov 1, 2011·Journal of Computational Biology : a Journal of Computational Molecular Cell Biology·Yun YuLuay Nakhleh
Jun 16, 2012·Journal of Computational Biology : a Journal of Computational Molecular Cell Biology·Md Shamsuzzoha Bayzid, Tandy Warnow
Jun 19, 2013·Journal of Interferon & Cytokine Research : the Official Journal of the International Society for Interferon and Cytokine Research·Olivier DetournayEva Wattrang
Mar 15, 2013·Molecular Biology of the Cell·Carme Gabernet-CastelloMark C Field
Mar 24, 2012·Briefings in Functional Genomics·Jordi PapsSebastian M Shimeld
Jan 25, 2011·Briefings in Bioinformatics·Alexandros Stamatakis, Fernando Izquierdo-Carrasco
Jun 10, 2010·Bioinformatics·Alexandros Stamatakis, Nikolaos Alachiotis
Jun 4, 2011·Bioinformatics·Simon A Berger, Alexandros Stamatakis
Dec 27, 2011·Bioinformatics·Benjamin P Blackburne, Simon Whelan
Feb 15, 2012·Bioinformatics·Christophe DessimozQuest for Orthologs Consortium
Apr 12, 2012·Bioinformatics·Hongtao Sun, Jeremy D Buhler
Jun 13, 2012·Bioinformatics·Serita NelesenTandy Warnow
Aug 31, 2013·Bioinformatics·Jiajie ZhangAlexandros Stamatakis
Feb 10, 2012·Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America·Chinyere K OkoroMelita A Gordon
Dec 17, 2009·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·S TangphatsornruangS Tragoonrung
Jan 3, 2012·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Yuichi YuzawaHiroyuki Ohta
Feb 9, 2012·DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes·Takeshi TakeuchiNori Satoh
Jul 14, 2010·Genome Biology and Evolution·Omar Rota-StabelliDennis V Lavrov
Jul 28, 2010·Genome Biology and Evolution·Tom A Williams, Mario A Fares
Feb 11, 2011·Genome Biology and Evolution·Tina Koestler, Ingo Ebersberger
Mar 30, 2011·Genome Biology and Evolution·Luděk Kořený, Miroslav Oborník
Jun 30, 2011·Genome Biology and Evolution·Jessica W LeighEric Bapteste
Jul 9, 2011·Genome Biology and Evolution·Naruo NikohTakema Fukatsu
Aug 31, 2011·Genome Biology and Evolution·Sébastien HalaryNicolas Corradi
Nov 16, 2011·Genome Biology and Evolution·Weilong HaoDavid C Alexander
Dec 6, 2011·Genome Biology and Evolution·Thomas E KellerClaus O Wilke
Dec 14, 2011·Genome Biology and Evolution·Małgorzata WojtkowskaWojciech Makałowski
Feb 2, 2012·Genome Biology and Evolution·Matthew A CampbellJason C Slot
May 18, 2012·Genome Biology and Evolution·Fabien BurkiPatrick J Keeling
Jul 21, 2012·Genome Biology and Evolution·Lucas Leclère, Fabian Rentzsch
Aug 14, 2012·Genome Biology and Evolution·Shigehiro KurakuAxel Meyer
Oct 5, 2012·Genome Biology and Evolution·Guoqin Yu, Arlin Stoltzfus
Nov 20, 2012·Genome Biology and Evolution·David WilliamsR Thane Papke
Nov 24, 2012·Genome Biology and Evolution·Sabrina SimonHeike Hadrys
Jan 15, 2013·Genome Biology and Evolution·Chung-Shien WuYa-Yi Huang
Jan 22, 2013·Genome Biology and Evolution·Gertraud BurgerB Franz Lang
Jan 26, 2013·Genome Biology and Evolution·Urszula BrykczynskaMichel C Milinkovitch
Apr 19, 2013·Genome Biology and Evolution·Natacha SenerchiaChristian Parisod
Jul 12, 2013·Genome Biology and Evolution·Nathalie FeinerShigehiro Kuraku
Aug 7, 2013·Genome Biology and Evolution·Gordon M Bennett, Nancy A Moran
Aug 7, 2013·Genome Biology and Evolution·Rebecca A Chong, Rachel Lockridge Mueller
Sep 12, 2013·Genome Biology and Evolution·Monique TurmelClaude Lemieux
Nov 6, 2013·Genome Biology and Evolution·Megan WoolfitScott L O'Neill
Nov 22, 2013·Genome Biology and Evolution·Jennifer H WisecaverJeremiah D Hackett
Nov 28, 2013·Genome Biology and Evolution·Jacek KominekBarry L Williams
Nov 28, 2013·Genome Biology and Evolution·Robert J M EveleighRobert Beiko
May 12, 2011·Integrative and Comparative Biology·Marymegan DalyEstefanía Rodríguez
May 12, 2011·Integrative and Comparative Biology·Paulyn Cartwright, Annalise M Nawrocki
Apr 24, 2012·Integrative and Comparative Biology·Ling Ming TsangBenny K K Chan
Apr 27, 2013·Integrative and Comparative Biology·Adam M ReitzelOren Levy
Jun 4, 2013·Integrative and Comparative Biology·Megan L PorterTodd H Oakley
Jun 27, 2013·Integrative and Comparative Biology·E HajduG Lôbo-Hajdu
Jun 25, 2013·Integrative and Comparative Biology·N E RedmondAllen G Collins
Sep 2, 2011·The Journal of Infectious Diseases·Viktor von WylSwiss HIV Cohort Study
Aug 30, 2012·The Journal of Infectious Diseases·Xiaowen ChengJinquan Cheng
Oct 30, 2007·International Immunology·Kathryn RannikkoMauno Vihinen
Jun 29, 2010·The Journal of Heredity·Michael WestermanMark S Springer
Aug 11, 2010·The Journal of Heredity·Christopher Blair, Robert W Murphy
Nov 6, 2012·The Journal of Heredity·Christopher BlairRobert W Murphy
May 19, 2010·Journal of Experimental Botany·Jianli LiangOttoline Leyser
May 6, 2008·Molecular Biology and Evolution·Arjun B PrasadEric D Green
Jun 14, 2008·Molecular Biology and Evolution·Salvatore D'AnielloJordi Garcia-Fernàndez
Sep 30, 2008·Molecular Biology and Evolution·Mayako KutsukakeTakema Fukatsu
Sep 19, 2008·Molecular Biology and Evolution·Ruth FrommoltMartin Lohr
Nov 8, 2008·Molecular Biology and Evolution·Fabia U Battistuzzi, S Blair Hedges
Nov 5, 2008·Molecular Biology and Evolution·Renae C PrattDavid Penny
Dec 17, 2008·Molecular Biology and Evolution·Yusuke YamanoueHarumi Sakai
Apr 21, 2009·Molecular Biology and Evolution·Morgan N PriceAdam P Arkin
May 6, 2009·Molecular Biology and Evolution·Nicholas M WadeBernard M Degnan
Aug 29, 2009·Molecular Biology and Evolution·Sabrina SimonHeike Hadrys
Sep 12, 2009·Molecular Biology and Evolution·Thomas L P CouvreurKlaus Mummenhoff
Oct 8, 2009·Molecular Biology and Evolution·Ramiro LogaresStefan Bertilsson
Feb 12, 2010·Molecular Biology and Evolution·Manuel IrimiaScott William Roy
Feb 20, 2010·Molecular Biology and Evolution·Anna PapadopoulouAlfried P Vogler
Apr 13, 2010·Molecular Biology and Evolution·Maximilian P NesnidalBernhard Hausdorf
May 14, 2010·Molecular Biology and Evolution·Reto BurriLuca Fumagalli
Jun 11, 2010·Molecular Biology and Evolution·Karen MeusemannBernhard Misof
Jun 26, 2010·Molecular Biology and Evolution·Nathaniel M EvansPaulyn Cartwright
Jul 2, 2010·Molecular Biology and Evolution·Enrico NegrisoloLuca Bargelloni
Jul 6, 2010·Molecular Biology and Evolution·Bojian ZhongMasami Hasegawa
Oct 23, 2010·Molecular Biology and Evolution·Gang LiWilliam J Murphy
Nov 20, 2010·Molecular Biology and Evolution·Arnau Sebé-PedrósIñaki Ruiz-Trillo
Nov 26, 2010·Molecular Biology and Evolution·Gemma C Atkinson, Sandra L Baldauf
Dec 8, 2010·Molecular Biology and Evolution·J Ignacio Lucas-LledóMichael Lynch
Dec 15, 2010·Molecular Biology and Evolution·Sunju KimCharles F Delwiche
Feb 3, 2011·Molecular Biology and Evolution·Marc GottschlingIgnacio G Bravo
Feb 5, 2011·Molecular Biology and Evolution·Courtney W StairsVladimir Hampl
Mar 12, 2011·Molecular Biology and Evolution·Benoit NabholzHans Ellegren
Feb 24, 2011·Molecular Biology and Evolution·Huai-Chun WangAndrew J Roger
May 3, 2011·Molecular Biology and Evolution·Haiwei LuoAustin L Hughes
Apr 21, 2011·Molecular Biology and Evolution·Josselin BodilisSylvie Barray
Apr 30, 2011·Molecular Biology and Evolution·Jessica W LeighEric Bapteste
Jun 22, 2011·Molecular Biology and Evolution·Astrid CollingroMatthias Horn
Jul 21, 2011·Molecular Biology and Evolution·Guifré TorruellaIñaki Ruiz-Trillo
Sep 9, 2011·Molecular Biology and Evolution·Johan ViklundSiv G E Andersson
Sep 24, 2011·Molecular Biology and Evolution·Ning WangRebecca T Kimball
Nov 3, 2011·Molecular Biology and Evolution·Fred D MastJoel B Dacks
Nov 25, 2011·Molecular Biology and Evolution·Jonathan C ThomasD Ashley Robinson
Dec 3, 2011·Molecular Biology and Evolution·Romain Derelle, B Franz Lang
Feb 10, 2012·Molecular Biology and Evolution·Raquel Rodríguez-MartínezRamon Massana
Feb 10, 2012·Molecular Biology and Evolution·Sen ZhaoKamran Shalchian-Tabrizi
Feb 10, 2012·Molecular Biology and Evolution·Robert LanfearStephane Guindon
Feb 18, 2012·Molecular Biology and Evolution·Juan C Santos
Apr 12, 2012·Molecular Biology and Evolution·Baocheng GuoAndreas Wagner
May 24, 2012·Molecular Biology and Evolution·Sang Chul ChoiAdam Siepel
May 26, 2012·Molecular Biology and Evolution·Jeremiah D HackettDeana L Erdner
May 26, 2012·Molecular Biology and Evolution·Ioannis StergiopoulosAntonis Rokas
Jul 24, 2012·Molecular Biology and Evolution·Daniel B Sloan, Nancy A Moran
Aug 30, 2012·Molecular Biology and Evolution·Béatrice RoureHervé Philippe
Sep 1, 2012·Molecular Biology and Evolution·Diya SenJack Sullivan
Sep 15, 2012·Molecular Biology and Evolution·Austin G Meyer, Claus O Wilke
Sep 15, 2012·Molecular Biology and Evolution·Cédric FinetFerdinand Marlétaz
Sep 15, 2012·Molecular Biology and Evolution·Julien GuglielminiEduardo P C Rocha
Oct 26, 2012·Molecular Biology and Evolution·Julie A KoesterE Virginia Armbrust
Nov 17, 2012·Molecular Biology and Evolution·Stacey D SmithMark D Rausher
Nov 13, 2012·Molecular Biology and Evolution·Benjamin P Blackburne, Simon Whelan
Feb 19, 2013·Molecular Biology and Evolution·Bui Quang MinhArndt von Haeseler
Apr 24, 2013·Molecular Biology and Evolution·Thomas W SchoenfeldBrian P Hedlund
May 15, 2013·Molecular Biology and Evolution·Peng ZhangDavid C Cannatella
Jun 19, 2013·Molecular Biology and Evolution·Arnau Sebé-PedrósIñaki Ruiz-Trillo
Jul 3, 2013·Molecular Biology and Evolution·Jonathan RomiguierEmmanuel J P Douzery
Jul 3, 2013·Molecular Biology and Evolution·Jeremy G WidemanJoel B Dacks
Sep 7, 2013·Molecular Biology and Evolution·Yubo HouSamuel S Bowser
Mar 24, 2009·Nucleic Acids Research·Fredrik B StabellAnne-Brit Kolstø
Jul 25, 2009·Nucleic Acids Research·Yao-Qing ShenGertraud Burger
Nov 11, 2010·Nucleic Acids Research·David A de Lima MoraisJulian Gough
May 5, 2010·Nucleic Acids Research·Daniel Glez-PeñaDavid Posada
Dec 14, 2011·Nucleic Acids Research·Thomas VeithEnrico Schleiff
Jul 27, 2012·Nucleic Acids Research·Emmanuel CornillotChoukri Ben Mamoun
Sep 25, 2010·Toxicological Sciences : an Official Journal of the Society of Toxicology·Maxwell C K LeungJoel N Meyer
Mar 15, 2012·Molecular Plant-microbe Interactions : MPMI·David A BaltrusJeffery L Dangl
Mar 17, 2011·Phytopathology·Melanie N MitchellDavid H Gent
Jun 29, 2012·AIDS·Ann M DennisJoseph J Eron
Jun 5, 2008·Biology Letters·Fabien BurkiJan Pawlowski
Jan 8, 2010·Biology Letters·Jun G InoueKatsumi Tsukamoto
Mar 11, 2011·Biology Letters·Martin I BidartondoJeffrey G Duckett
Oct 28, 2011·Biology Letters·Michael S Y Lee, Trevor H Worthy
Sep 15, 2012·Biology Letters·Daniel B Sloan, Nancy A Moran
Nov 30, 2012·Biology Letters·Jérôme MurienneGonzalo Giribet
Nov 11, 2011·Journal of the Royal Society, Interface·Jukka CoranderWilliam P Hanage
Nov 27, 2008·Proceedings. Biological Sciences·Michael J RaupachJohann-Wolfgang Wägele
Nov 14, 2008·Proceedings. Biological Sciences·Marianne A MingeKjetill S Jakobsen
Jan 9, 2009·Proceedings. Biological Sciences·Jordi PapsMarta Riutort
Jul 10, 2009·Proceedings. Biological Sciences·Erem KazanciogluPeter C Wainwright
Nov 20, 2009·Proceedings. Biological Sciences·Bastian BentlageAllen G Collins
Nov 27, 2009·Proceedings. Biological Sciences·Tara L Fulton, Curtis Strobeck
Jan 29, 2010·Proceedings. Biological Sciences·Luis M ValentePablo Vargas
Nov 26, 2010·Proceedings. Biological Sciences·Sean P MullenKeith R Willmott
Aug 19, 2011·Proceedings. Biological Sciences·G David JohnsonMasaki Miya
Sep 17, 2011·Proceedings. Biological Sciences·Maria HeikkiläNiklas Wahlberg
Nov 25, 2011·Proceedings. Biological Sciences·Elizabeth R DumontChristian C Voigt
Feb 3, 2012·Proceedings. Biological Sciences·Fabien BurkiPatrick J Keeling
Jan 6, 2012·Proceedings. Biological Sciences·Sushma ReddyT S Schulenberg
Dec 16, 2011·Proceedings. Biological Sciences·Martin Ryberg, P Brandon Matheny
Feb 10, 2012·Proceedings. Biological Sciences·Tara L FultonBeth Shapiro
May 26, 2012·Proceedings. Biological Sciences·Gudrun KadereitMichael D Pirie
May 26, 2012·Proceedings. Biological Sciences·Harald LetschBernhard Misof
Aug 17, 2012·Proceedings. Biological Sciences·Víctor Soria-Carrasco, Jose Castresana
Oct 26, 2012·Proceedings. Biological Sciences·Tom A WilliamsT Martin Embley
Mar 1, 2013·Proceedings. Biological Sciences·Lu YangShuqiang Li
Mar 29, 2013·Proceedings. Biological Sciences·Krystal A TolleyMiguel Vences
Jun 14, 2013·Proceedings. Biological Sciences·David H HembryRosemary G Gillespie
Dec 12, 2012·Philosophical Transactions. Series A, Mathematical, Physical, and Engineering Sciences·Jeremy CohenMatt Harvey
Oct 15, 2008·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Alexandros Stamatakis, Michael Ott
Jul 3, 2009·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Peter G FosterT Martin Embley
Jan 6, 2010·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Sarah MathewsMark A Beilstein
Aug 3, 2011·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Mark S SpringerWilliam J Murphy
Aug 15, 2012·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Eric TalevichChristian Doerig
Mar 13, 2013·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Laura A HugLorenz Adrian
Feb 6, 2013·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Austin G MeyerClaus O Wilke
Aug 28, 2013·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Maria ByrneSven Uthicke
Jan 9, 2013·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·David R NelsonJohn J Stegeman
Jun 8, 2011·Cold Spring Harbor Perspectives in Biology·Mary J KluteJoel B Dacks
Apr 27, 2012·Genome Research·Daniel GarriganDaven C Presgraves
Dec 1, 2011·Plant Physiology·Pradeepa C G BandaranayakeJohn I Yoder
Aug 16, 2012·Biological Reviews of the Cambridge Philosophical Society·Liliana M DávalosNancy B Simmons
Jun 28, 2008·Science·Shannon J HackettTamaki Yuri
Oct 4, 2008·Science·Stephen A Smith, Michael J Donoghue
Jun 23, 2009·Science·Ari Löytynoja, Nick Goldman
Jun 18, 2011·Science·Michael J SandersonMike Steel
Aug 13, 2011·Science·Anna RoslingTimothy Y James
Feb 9, 2013·Science·Maureen A O'LearyAndrea L Cirranello
Nov 16, 2013·Science·Christopher E Ellison, Doris Bachtrog
Jul 5, 2011·Applied and Environmental Microbiology·John M GladdenSteven W Singer
Jun 15, 2011·Applied and Environmental Microbiology·Laura A HugElizabeth A Edwards
Apr 16, 2013·Applied and Environmental Microbiology·William J BrazeltonMatthew O Schrenk
Aug 19, 2007·Applied and Environmental Microbiology·John R SpearNorman R Pace
Apr 9, 2013·Applied and Environmental Microbiology·Frank O AylwardMichael Poulsen
Jun 23, 2009·Applied and Environmental Microbiology·Gaelen R BurkeNancy A Moran
May 15, 2012·Applied and Environmental Microbiology·Jason W SahlDavid A Rasko
Nov 26, 2010·Applied and Environmental Microbiology·Stephanie A EichorstThomas M Schmidt
Nov 6, 2007·Applied and Environmental Microbiology·Jason W SahlJohn R Spear
Dec 18, 2007·Applied and Environmental Microbiology·Alga ZuccaroJulian I Mitchell
Jul 3, 2013·Applied and Environmental Microbiology·Virginia O StockwellJoyce E Loper
Jun 19, 2013·Applied and Environmental Microbiology·Yoshiko IshiiTakema Fukatsu
Jul 23, 2013·Applied and Environmental Microbiology·Kelly L RoeKatherine A Barbeau
Oct 5, 2010·Applied and Environmental Microbiology·Emma J GagenChristopher S McSweeney
Dec 31, 2008·Applied and Environmental Microbiology·Charles E RobertsonNorman R Pace
Dec 18, 2007·Applied and Environmental Microbiology·Thomas A IsenbargerGary Ruvkun
Dec 25, 2012·Applied and Environmental Microbiology·Michael L Weltzer, Scott R Miller
Jan 22, 2013·Applied and Environmental Microbiology·Russell J S OrrKjetill S Jakobsen
Sep 29, 2011·Applied and Environmental Microbiology·Diya SenE M Top
Dec 24, 2011·Applied and Environmental Microbiology·Johanna SjöstedtLasse Riemann
Oct 18, 2011·Applied and Environmental Microbiology·José M GonzálezCarlos Pedrós-Alió
Feb 7, 2012·Applied and Environmental Microbiology·G A PerkinsK W Simpson
Nov 15, 2011·Applied and Environmental Microbiology·Tsvetan R BachvaroffD Wayne Coats
Dec 24, 2011·Applied and Environmental Microbiology·Jennifer K ParkerLeonardo De La Fuente
Feb 7, 2012·Applied and Environmental Microbiology·Vincent G MartinsonNancy A Moran
Nov 3, 2010·Eukaryotic Cell·Maria José BarberàAndrew J Roger
Jul 10, 2012·Journal of Bacteriology·Nicholas N NickersonAnthony P Pugsley
Mar 9, 2010·Journal of Bacteriology·Kelly P WilliamsAllan W Dickerman
Feb 12, 2013·Journal of Bacteriology·Ana B AbecasisAdriano O Henriques
Apr 5, 2013·Journal of Clinical Microbiology·Matthew L RanieriMartin Wiedmann
Jun 8, 2012·Journal of Virology·Yukari AnaiKazuo Nishigaki
Apr 19, 2013·Journal of Virology·Amit KapoorW Ian Lipkin
Jul 5, 2013·Journal of Virology·Takayuki ShojimaTakayuki Miyazawa
Feb 11, 2011·Journal of Virology·Eva DörrschuckRalf R Tönjes
Sep 7, 2012·Journal of Virology·Christine C YokoyamaLarissa B Thackray
Aug 15, 2013·MBio·Benjamin P HowdenTimothy P Stinear
Dec 1, 2009·Microbiology and Molecular Biology Reviews : MMBR·Norman R Pace
Aug 21, 2013·Genome Génome / Conseil National De Recherches Canada·Zhao-Yu GeZhao-Jun Han
Dec 15, 2010·Journal of Bioinformatics and Computational Biology·Yang LiJi Yang
Jul 3, 2013·Annual Review of Microbiology·David T KyselaYves V Brun
Jan 10, 2012·Advances in Bioinformatics·Malte BrinkmeyerSebastian Böcker
Oct 30, 2009·BMC Bioinformatics·Surendra KumarKamran Shalchian-Tabrizi
Apr 14, 2010·BMC Bioinformatics·Stephanie Zierke, Jason D Bakos
Jan 7, 2010·BMC Bioinformatics·Ben C Stöver, Kai F Müller
Jan 11, 2011·BMC Bioinformatics·Robert LückingReed A Cartwright
Jan 26, 2011·BMC Bioinformatics·Martin O JonesMark Blaxter
Dec 15, 2011·BMC Bioinformatics·Fernando Izquierdo-CarrascoAlexandros Stamatakis
Mar 5, 2011·BMC Bioinformatics·Wen-Chieh ChangOliver Eulenstein
Dec 22, 2011·BMC Bioinformatics·Jimmy Yang, Tandy Warnow
Oct 5, 2012·BMC Bioinformatics·Avinash RamuJ Gordon Burleigh