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Reference-based compression of short-read sequences using path encoding

Bioinformatics

Feb 5, 2015

Carl Kingsford, Rob Patro

Abstract

Storing, transmitting and archiving data produced by next-generation sequencing is a significant computational burden. New compression techniques tailored to short-read sequence data are needed. We present here an approach to compression that reduces the difficulty of managing large-sca...read more

Mentioned in this Paper

Computer Software
Anatomical Space Structure
Mac-3
Computer Programs and Programming
Genomics
Pseudomonas aeruginosa
Massively-Parallel Sequencing
Reading Frames (Nucleotide Sequence)
Programming Languages
High-Throughput Nucleotide Sequencing
28
40
1
Paper Details
References
  • References34
  • Citations11
1234
  • References34
  • Citations11
12

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Reference-based compression of short-read sequences using path encoding

Bioinformatics

Feb 5, 2015

Carl Kingsford, Rob Patro

PMID: 25649622

DOI: 10.1093/bioinformatics/btv071

Abstract

Storing, transmitting and archiving data produced by next-generation sequencing is a significant computational burden. New compression techniques tailored to short-read sequence data are needed. We present here an approach to compression that reduces the difficulty of managing large-sca...read more

Mentioned in this Paper

Computer Software
Anatomical Space Structure
Mac-3
Computer Programs and Programming
Genomics
Pseudomonas aeruginosa
Massively-Parallel Sequencing
Reading Frames (Nucleotide Sequence)
Programming Languages
High-Throughput Nucleotide Sequencing
28
40
1

Similar Papers Found In These Feeds

Structural Biology: Biophysics

Structural Biology: Biophysics describes the study of structural biology using various biophysical techiniques such as imaging, computational modeling, etc. Discover the latest research on structrual biology here.

Related Papers

Bioinformatics

PyCorrFit-generic data evaluation for fluorescence correlation spectroscopy

BioinformaticsMay 16, 2014
Paul MüllerThomas Weidemann
Paper Details
References
  • References34
  • Citations11
1234
  • References34
  • Citations11
12
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