PMID: 7409756Aug 1, 1980Paper

Repetitive DNA in three Gramineae species with low DNA content

Hoppe-Seyler's Zeitschrift für physiologische Chemie
V G Deshpande, P K Ranjekar

Abstract

The genomes of three Gramineae species, namely finger millet (Eleusine coracana), pearl millet (Pennisetum americanum) and rice (Oryza sativa) are characterized by studying their DNA denaturation-reassociation properties. The reassociation kinetics measurement of the sonicated DNA (500--700 nucleotide pairs) indicate the presence of a heterogeneous, repetitive DNA fraction accounting for 49--54% of the total DNA in all three species. From the cot 1/2 value of the slow reassociating DNA, the genome size is estimated as 3.0 X 10(8) np in finger millet, 7.8 X 10(8) np in pearl millet and 9.0 X 10(8) np in rice. The melting patterns of the total DNAs reveal Tm value of 88.6 degrees C in the case of pearl millet and 85.0 degrees C in the case of finger millet and rice. Total repetitive and cot 1.0 DNA fractions in all the three species are isolated and their melting properties are compared with those of respective sonicated DNAs. In finger millet, the Tm values of cot 25 and cot 1 fractions are lower by 10.8 degrees C and 12.8 degrees C, respectively, than that of sonicated DNA and thus exhibit the presence of a base pair mismatch in the range of 10.8--12.8%. In rice, the Tm values of the fractions cot 50 and cot 1 are slightly lowe...Continue Reading

References

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Citations

Nov 1, 1986·Plant Molecular Biology·L SivaramanP K Ranjekar
Dec 1, 1988·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·S R McCouchS D Tanksley
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Apr 1, 1995·Genome Génome / Conseil National De Recherches Canada·Y MawalR Wu

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