Rice Expression Database (RED): An integrated RNA-Seq-derived gene expression database for rice

Journal of Genetics and Genomics = Yi Chuan Xue Bao
Lin XiaZhang Zhang

Abstract

Rice is one of the most important stable food as well as a monocotyledonous model organism for the plant research community. Here, we present RED (Rice Expression Database; http://expression.ic4r.org), an integrated database of rice gene expression profiles derived entirely from RNA-Seq data. RED features a comprehensive collection of 284 high-quality RNA-Seq experiments, integrates a large number of gene expression profiles and covers a wide range of rice growth stages as well as various treatments. Based on massive expression profiles, RED provides a list of housekeeping and tissue-specific genes and dynamically constructs co-expression networks for gene(s) of interest. Besides, it provides user-friendly web interfaces for querying, browsing and visualizing expression profiles of concerned genes. Together, as a core resource in BIG Data Center, RED bears great utility for characterizing the function of rice genes and better understanding important biological processes and mechanisms underlying complex agronomic traits in rice.

Citations

Aug 18, 2018·Science·UNKNOWN International Wheat Genome Sequencing Consortium (IWGSC)Cristobal Uauy
Oct 17, 2017·Nucleic Acids Research·UNKNOWN BIG Data Center Members
Oct 2, 2019·The New Phytologist·Philippa Borrill
Jan 23, 2020·Journal of Integrative Plant Biology·Menglong WangXiaoyan Tang
Jun 6, 2020·Database : the Journal of Biological Databases and Curation·Gleb MoisseyevChi Zhang
Nov 9, 2019·Nucleic Acids Research·UNKNOWN National Genomics Data Center Members and Partners
Apr 4, 2019·BMC Research Notes·Lotte WitjesHarm Nijveen
Nov 10, 2020·Science China. Life Sciences·Rui ZhangCaixia Gao
Nov 12, 2020·Nucleic Acids Research·UNKNOWN CNCB-NGDC Members and Partners
Dec 2, 2020·Database : the Journal of Biological Databases and Curation·Kwanjeera Wanichthanarak, Maysaya Thitisaksakul
Jan 17, 2021·Nature Plants·Zhaonan Ban, Mark Estelle
Jan 10, 2021·The Plant Journal : for Cell and Molecular Biology·John Vaughan-HirschJoseph J Kieber
Jan 30, 2021·Computational and Structural Biotechnology Journal·Haiyue ZengYi Wang
Nov 19, 2020·Genes·Marek MarzecAgnieszka Brąszewska
Oct 11, 2021·The Plant Journal : for Cell and Molecular Biology·Raju MondalSanjib Kumar Chattopadhyay
Dec 22, 2021·Journal of Biomolecular Structure & Dynamics·Sujay RayKoustav Biswas

❮ Previous
Next ❯

Related Concepts

Related Feeds

Aphasia

Aphasia affects the ability to process language, including formulation and comprehension of language and speech, as well as the ability to read or write. Here is the latest research on aphasia.