RNA-protein interactions in an unstructured context.

FEBS Letters
Bojan ZagrovicAnton A Polyansky

Abstract

Despite their importance, our understanding of noncovalent RNA-protein interactions is incomplete. This especially concerns the binding between RNA and unstructured protein regions, a widespread class of such interactions. Here, we review the recent experimental and computational work on RNA-protein interactions in an unstructured context with a particular focus on how such interactions may be shaped by the intrinsic interaction affinities between individual nucleobases and protein side chains. Specifically, we articulate the claim that the universal genetic code reflects the binding specificity between nucleobases and protein side chains and that, in turn, the code may be seen as the Rosetta stone for understanding RNA-protein interactions in general.

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Citations

Sep 11, 2018·FEBS Letters·Mihaela Zavolan, André P Gerber
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Methods Mentioned

BETA
dissection
deamination

Software Mentioned

RCK
RNAcontext
DisoRDPbind
DeepBind
catRAPID
DisCons

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