RNA secondary structure prediction.

Current Protocols in Nucleic Acid Chemistry
D H MathewsM Zuker

Abstract

Details for predicting secondary structure of RNA sequences using free energy minimization are given. Protocols present the use of the RNAstructure computer program (for PCs) and the mfold server (for Unix platforms). The minimum free energy structure and a set of suboptimal structures with similar free energies are predicted. Prediction of high-affinity oligonucleotide binding sites to a structured RNA target is also presented.

References

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Citations

Mar 12, 2010·Journal of Virology·Kasandra J-L RileyJoan A Steitz
Apr 22, 2011·BMC Medical Genomics·Dwi U KemaladewiPeter A C 't Hoen
Jul 28, 2013·International Journal of Molecular Sciences·Giovanni BussottiAnton J Enright
Jul 26, 2012·Bioinformation·Paula M Villegas-RosalesBlanca L Barrón
Feb 11, 2015·RNA Biology·Sylvanne M DanielsAnne Gatignol
Dec 5, 2015·FEBS Open Bio·Michael S ParkerSteven L Parker
Oct 21, 2009·FASEB Journal : Official Publication of the Federation of American Societies for Experimental Biology·Sadeq Nabavi, Ross N Nazar
Jun 19, 2014·Current Protocols in Bioinformatics·David H Mathews
Jun 20, 2012·FEBS Letters·Guillermo RodrigoAlfonso Jaramillo
Aug 9, 2020·Journal of Biomolecular Structure & Dynamics·Bishajit SarkarAbu Tayab Moin
May 21, 2015·Journal of Physics. Condensed Matter : an Institute of Physics Journal·Tristan CragnoliniSamuela Pasquali
Aug 11, 2020·Journal of Biomolecular Structure & Dynamics·Bishajit SarkarMohammad Jakir Hosen
May 6, 2020·International Journal of Molecular Sciences·Tin Hoang Trung ChauEun Yeol Lee
Mar 23, 2018·Frontiers in Genetics·Michael S ParkerSteven L Parker

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