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RNA-Seq gene profiling--a systematic empirical comparison

PloS One

Oct 1, 2014

Nuno A FonsecaAlvis Brazma

Abstract

Accurately quantifying gene expression levels is a key goal of experiments using RNA-sequencing to assay the transcriptome. This typically requires aligning the short reads generated to the genome or transcriptome before quantifying expression of pre-defined sets of genes. Differences i...read more

Mentioned in this Paper

In Silico
Exons
Sequence Determinations, RNA
Aggregation
Spearman Correlation Test
LNPEP gene
Gene Expression
IL1RN gene
IL1RN wt Allele
Sequencing
10
239
1
Paper Details
References
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  • Citations20
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  • References31
  • Citations20
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RNA-Seq gene profiling--a systematic empirical comparison

PloS One

Oct 1, 2014

Nuno A FonsecaAlvis Brazma

PMID: 25268973

DOI: 10.1371/journal.pone.0107026

Abstract

Accurately quantifying gene expression levels is a key goal of experiments using RNA-sequencing to assay the transcriptome. This typically requires aligning the short reads generated to the genome or transcriptome before quantifying expression of pre-defined sets of genes. Differences i...read more

Mentioned in this Paper

In Silico
Exons
Sequence Determinations, RNA
Aggregation
Spearman Correlation Test
LNPEP gene
Gene Expression
IL1RN gene
IL1RN wt Allele
Sequencing
10
239
1

Similar Papers Found In These Feeds

Human Cell Atlas Consortium

The aim of the Human Cell Atlas is to build reference maps of all human cells in order to enhance our understanding of health and disease. Follow the latest research from the Human Cell Atlas Consortium here.

European Bioinformatics Institute

European Bioinformatics Institute focuses both on data resource development and investigator-driven research in the field of bioinformatics. Follow this feed to stay up to date on research by this institute.

Related Papers

Paper Details
References
  • References31
  • Citations20
1234
  • References31
  • Citations20
12
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