RPPanalyzer: Analysis of reverse-phase protein array data

Bioinformatics
Heiko MannspergerUlrike Korf

Abstract

RPPanalyzer is a statistical tool developed to read reverse-phase protein array data, to perform the basic data analysis and to visualize the resulting biological information. The R-package provides different functions to compare protein expression levels of different samples and to normalize the data. Implemented plotting functions permit a quality control by monitoring data distribution and signal validity. Finally, the data can be visualized in heatmaps, boxplots, time course plots and correlation plots. RPPanalyzer is a flexible tool and tolerates a huge variety of different experimental designs. The RPPAanalyzer is open source and freely available as an R-Package on the CRAN platform http://cran.r-project.org/.

References

Jun 30, 2007·Bioinformatics·Jianhua HuGordon B Mills
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Citations

Apr 3, 2012·Bioinformatics·Bin LiAnd Xuming He
Aug 22, 2012·Biostatistics·David Rossell, Peter Müller
Dec 25, 2010·Proteome Science·Heiko A MannspergerUlrike Korf
Aug 28, 2014·Bioinformatics·Markus ListJan Mollenhauer
Jan 30, 2016·Drug Metabolism and Pharmacokinetics·Satoshi S Nishizuka, Gordon B Mills
Jul 28, 2015·Expert Review of Molecular Diagnostics·Stefanie Boellner, Karl-Friedrich Becker
Dec 15, 2015·Breast Cancer Research and Treatment·Ola H NegmAndrew R Green
Jun 22, 2014·Bio Systems·Johannes EichnerAndreas Zell
Mar 13, 2015·Breast Cancer Research and Treatment·Rezvan AbduljabbarIan O Ellis
Jan 22, 2015·Nucleic Acids Research·Matthew E RitchieGordon K Smyth
Mar 22, 2015·Breast Cancer Research and Treatment·Rezvan AbduljabbarEmad Rakha
Apr 10, 2012·Journal of Immunological Methods·Pavlo HolenyaStefan Wölfl
Aug 5, 2014·American Journal of Human Genetics·Ronald J HauseRichard Baker Jones
Sep 12, 2014·BioTechniques·Silvia von der HeydeTim Beißbarth
Jul 29, 2016·Breast Cancer Research and Treatment·Alaa Tarig AlshareedaEmad A Rakha
Sep 7, 2016·Breast Cancer Research and Treatment·Dena A J AhmadEmad A Rakha
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Feb 27, 2018·Journal of Bioinformatics and Computational Biology·A Ranjitha Dhanasekaran, Katheleen J Gardiner
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Oct 13, 2017·Breast Cancer Research : BCR·Stephan BernhardtEva Johanna Kantelhardt
Aug 18, 2020·Computational and Structural Biotechnology Journal·Jing TangFeng Zhu
Dec 29, 2020·International Journal of Cancer. Journal International Du Cancer·Devina MitraStefan Wiemann
May 25, 2021·Computational and Structural Biotechnology Journal·Kennedy MwaiFaith Osier
Jan 5, 2019·Journal of Proteome Research·Stephan BernhardtStefan Wiemann

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