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SAMMate: a GUI tool for processing short read alignments in SAM/BAM format

Source Code for Biology and Medicine

Jan 15, 2011

Guorong XuDongxiao Zhu

Abstract

Next Generation Sequencing (NGS) technology generates tens of millions of short reads for each DNA/RNA sample. A key step in NGS data analysis is the short read alignment of the generated sequences to a reference genome. Although storing alignment information in the Sequence Alignment/M...read more

Mentioned in this Paper

DNA Methylation [PE]
Exons
Genome
Ncbi Taxonomy
Menopause
DNA Methylation
Bio-Informatics
Gene Expression
Sorting - Cell Movement
Genomics
Paper Details
References
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  • Citations28
12
  • References18
  • Citations28
123

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SAMMate: a GUI tool for processing short read alignments in SAM/BAM format

Source Code for Biology and Medicine

Jan 15, 2011

Guorong XuDongxiao Zhu

PMID: 21232146

DOI: 10.1186/1751-0473-6-2

Abstract

Next Generation Sequencing (NGS) technology generates tens of millions of short reads for each DNA/RNA sample. A key step in NGS data analysis is the short read alignment of the generated sequences to a reference genome. Although storing alignment information in the Sequence Alignment/M...read more

Mentioned in this Paper

DNA Methylation [PE]
Exons
Genome
Ncbi Taxonomy
Menopause
DNA Methylation
Bio-Informatics
Gene Expression
Sorting - Cell Movement
Genomics

Similar Papers Found In These Feeds

MicroRNAs & Open Reading Frames

MicroRNAs are small non-coding RNAs that modulate gene expression at post-transcriptional level, playing a crucial role in cell differentiation and development. Discover the latest research on MicroRNAs & how they target Open Reading Frames.

Structure and Function of DNA

The double helix structure of DNA is important for its biological function. Discover the latest research on the Structure and Function of DNA here.

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The Sequence Alignment/Map format and SAMtools

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HSA: a heuristic splice alignment tool

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Paper Details
References
  • References18
  • Citations28
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