Abstract
We describe semantic relation (SR) classification on medical discharge summaries. We focus on relations targeted to the creation of problem-oriented records. Thus, we define relations that involve the medical problems of patients. We represent patients' medical problems with their diseases and symptoms. We study the relations of patients' problems with each other and with concepts that are identified as tests and treatments. We present an SR classifier that studies a corpus of patient records one sentence at a time. For all pairs of concepts that appear in a sentence, this SR classifier determines the relations between them. In doing so, the SR classifier takes advantage of surface, lexical, and syntactic features and uses these features as input to a support vector machine. We apply our SR classifier to two sets of medical discharge summaries, one obtained from the Beth Israel-Deaconess Medical Center (BIDMC), Boston, MA and the other from Partners Healthcare, Boston, MA. On the BIDMC corpus, our SR classifier achieves micro-averaged F-measures that range from 74% to 95% on the various relation types. On the Partners corpus, the micro-averaged F-measures on the various relation types range from 68% to 91%. Our experiments show...Continue Reading
References
Mar 14, 1968·The New England Journal of Medicine·L L Weed
Mar 1, 1994·Journal of the American Medical Informatics Association : JAMIA·C FriedmanS B Johnson
Jul 27, 2001·Bioinformatics·C FriedmanA Rzhetsky
Feb 3, 2005·Journal of the American Medical Informatics Association : JAMIA·George Hripcsak, Adam S Rothschild
Aug 20, 2005·Health Information and Libraries Journal
Dec 5, 2006·Bioinformatics·Katrin FundelRalf Zimmer
Apr 25, 2008·BMC Bioinformatics·Markus BundschusHans-Peter Kriegel
Oct 28, 2008·Journal of the American Medical Informatics Association : JAMIA·Ozlem UzunerTawanda Sibanda
Dec 17, 2008·BMC Bioinformatics·Angus RobertsYikun Guo
Feb 25, 2010·BMC Bioinformatics·Quoc-Chinh BuiPeter M A Sloot
Citations
Jun 17, 2011·BMC Bioinformatics·Rezarta Islamaj DoğanZhiyong Lu
Jan 17, 2014·Journal of the American Medical Informatics Association : JAMIA·Yuan LuoPeter Szolovits
Jul 12, 2012·Journal of the American Medical Informatics Association : JAMIA·Prateek Jindal, Dan Roth
Jun 21, 2011·Journal of the American Medical Informatics Association : JAMIA·Özlem UzunerScott L DuVall
Mar 10, 2016·Journal of Medical Internet Research·Rajani Shankar SadasivamThomas K Houston
Sep 14, 2013·IEEE Transactions on Visualization and Computer Graphics·Michael A ZmudaEric Hodgson
Nov 30, 2012·IEEE Transactions on Cybernetics·Xiao-Bing HuEzequiel Di Paolo
Aug 11, 2012·IEEE Transactions on Visualization and Computer Graphics·Christopher G Healey, Brent M Dennis
Nov 12, 2013·Computers in Biology and Medicine·Matias F GerardDiego H Milone
Nov 15, 2011·Journal of the American Medical Informatics Association : JAMIA·Isaac S KohaneShawn N Murphy
Apr 14, 2017·Journal of Biomedical Informatics·Bin HeChunyan Qu
Dec 28, 2018·Journal of the American Medical Informatics Association : JAMIA·Yifu LiYuan Luo
Jun 22, 2012·Medical Care·Marianne Hamilton LopezCourtney Segal
Jun 7, 2014·Journal of Medical Internet Research·David C MohrParisa Rashidi
Oct 13, 2017·Journal of the American Medical Informatics Association : JAMIA·Yuan LuoJustin Starren
Aug 28, 2020·Journal of Dental Education·Emir Yüzbaşıoğlu
Jul 3, 2016·Journal of Biomedical Semantics·Danielle L MoweryWendy W Chapman
Mar 17, 2020·Health Information Science and Systems·Xin LiChunxiao Xing