Mar 3, 2015

Sensitivity analysis of Wnt β-catenin based transcription complex might bolster power-logarithmic psychophysical law and reveal preserved gene gene interactions

BioRxiv : the Preprint Server for Biology
Shriprakash Sinha

Abstract

Recently, psychophysical laws have been observed to be functional in certain factors working downstream of the Wnt pathway. This work tests the veracity of the prevalence of such laws, albeit at a coarse level, using sensitivity analysis on biologically inspired epigenetically influenced computational causal models. In this work, the variation in the effect of the predictive behaviour of the transcription complex (TRCMPLX) conditional on the evidences of gene expressions in normal/tumor samples is observed by varying the initially assigned values of conditional probability tables (cpt) for TRCMPLX. Preliminary analysis shows that the variation in predictive behaviour of TRCMPLX follows power-logarithmic psychophysical law, crudely. More recently, wet lab experiments have proved the existence of sensors that behave in a logarithmic fashion thus supporting the earlier proposed postulates based on computational sensitivity analysis of this manuscript regarding the existence of logarithmic behaviour in the signaling pathways. It also signifies the importance of systems biology approach where in silico experiments combined with in vivo/in vitro experiments have the power to explore the deeper mechanisms of a signaling pathway. Addit...Continue Reading

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Mentioned in this Paper

In Vivo
ATM wt Allele
Biochemical Pathway
SFRP2 gene
Genes
DKK1
DKK1 gene
Neoplasms
Signal Transduction Pathways
DACT2

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