Short genome report of cellulose-producing commensal Escherichia coli 1094

Standards in Genomic Sciences
Joaquin Bernal-BayardJean-Marc Ghigo

Abstract

Bacterial surface colonization and biofilm formation often rely on the production of an extracellular polymeric matrix that mediates cell-cell and cell-surface contacts. In Escherichia coli and many Betaproteobacteria and Gammaproteobacteria cellulose is often the main component of the extracellular matrix. Here we report the complete genome sequence of the cellulose producing strain E. coli 1094 and compare it with five other closely related genomes within E. coli phylogenetic group A. We present a comparative analysis of the regions encoding genes responsible for cellulose biosynthesis and discuss the changes that could have led to the loss of this important adaptive advantage in several E. coli strains. Data deposition: The annotated genome sequence has been deposited at the European Nucleotide Archive under the accession number PRJEB21000.

References

Sep 1, 1985·Proceedings of the National Academy of Sciences of the United States of America·J A LeighG C Walker
Jul 1, 1995·The Plant Cell·D P Delmer, Y Amor
May 26, 1999·FEMS Microbiology Letters·T A Tatusova, T L Madden
Jul 13, 2000·Journal of Computational Biology : a Journal of Computational Molecular Cell Biology·Z ZhangW Miller
Sep 30, 2000·Applied and Environmental Microbiology·O ClermontE Bingen
Jun 18, 2002·Research in Microbiology·Ute Römling
Jul 27, 2002·Annual Review of Microbiology·P StoodleyJ W Costerton
Jun 25, 2005·Bioinformatics·Tim J CarverJulian Parkhill
Apr 6, 2006·Journal of Bacteriology·Sandra Da Re, Jean-Marc Ghigo
Feb 12, 2008·BMC Genomics·Ramy K AzizOlga Zagnitko
Apr 30, 2008·Nucleic Acids Research·Ibtissem GrissaChristine Pourcel
May 10, 2008·Nature Biotechnology·Dawn FieldAnil Wipat
May 20, 2009·Bioinformatics·Heng Li, Richard Durbin
Jun 10, 2009·Bioinformatics·Heng LiUNKNOWN 1000 Genome Project Data Processing Subgroup
Jan 30, 2010·Bioinformatics·Aaron R Quinlan, Ira M Hall
Aug 3, 2010·Nature Reviews. Microbiology·Hans-Curt Flemming, Jost Wingender
Feb 1, 2011·Bioinformatics·Mitchell J SullivanScott A Beatson
Oct 1, 2011·Nature Methods·Thomas Nordahl PetersenHenrik Nielsen
May 7, 2013·Nature Methods·Chen-Shan ChinJonas Korlach
Oct 8, 2013·Journal of Computational Biology : a Journal of Computational Molecular Cell Biology·Sergey NurkPavel A Pevzner
Oct 8, 2013·Journal of Bacteriology·Diego O SerraRegine Hengge
Mar 17, 2015·Journal of Biomedical Semantics·Şenay KafkasJohanna R McEntyre
Dec 18, 2015·Nucleic Acids Research·Robert D FinnAlex Bateman

❮ Previous
Next ❯

Citations

Sep 15, 2020·Science Advances·Thaïs CouasnonAlexandre Gélabert
Sep 17, 2020·Science Advances·Thaïs CouasnonAlexandre Gélabert

❮ Previous
Next ❯

Datasets Mentioned

BETA
LT883139-LT883142
AP009048
CP001665
CP000802
CP000946
FN649414
CP016838
.1
CP011314
CP016765

Methods Mentioned

BETA
PCR
Illumina sequencing
DNA-Seq
amino acid exchange

Software Mentioned

Fastq
Gingr
Bwa
CRISPRFinder
TMHMM Server
picardtools SamToFastq
mem
BLASTN
Celera Assembler
CLC Bio

Related Concepts

Related Feeds

Biofilms

Biofilms are adherent bacterial communities embedded in a polymer matrix and can cause persistent human infections that are highly resistant to antibiotics. Discover the latest research on Biofilms here.